TREP, the TRansposable Elements Platform
nrTREP contains sequences from the following genera and species
Click on hyperlinks to download individual subsets for genus or species (in FASTA format).
| Genus | Species | Total elements | Taxo1 | Taxo2 |
|---|---|---|---|---|
| Sus | scrofa | 3 | Aminalia | Mammalia |
| Dictyostelium | pupureum | 7 | Amoebozoa | Evosea |
| Entamoeba | histolytica | 2 | Amoebozoa | Evosea |
| Halobaculum | magnesiiphilum | 2 | Archaea | Haloferacaceae |
| Stemphylium | lycopersici | 1 | Ascomycota | Dothideomycetes |
| Aspergillus | calidoustus | 2 | Ascomycota | Eurotiomycetes |
| Blumeria | graminis_hordei | 15 | Ascomycota | Leotiomycetes |
| Blumeria | graminis_tritici | 546 | Ascomycota | Leotiomycetes |
| Histoplasma | capsulatum | 1 | Ascomycota | Onygenales |
| Paraphoma | chrysanthemicola | 1 | Ascomycota | Pleosporales |
| Setosphaeria | turcica | 1 | Ascomycota | Pleosporales |
| Acidobacteriaceae | species | 1 | bacteria | - |
| Beijerinckiaceae | species | 2 | bacteria | - |
| Capsulimonas | corticalis | 3 | bacteria | - |
| Granulibacter | bethesdensis | 1 | bacteria | - |
| Lichenicola | cladoniae | 1 | bacteria | - |
| Lichenihabitans | psoromatis | 1 | bacteria | - |
| Microbacterium | species | 3 | bacteria | - |
| Phenylobacterium | zucineum | 1 | bacteria | - |
| Sphingomonas | panacis | 1 | bacteria | - |
| Sphingomonas | spe | 1 | bacteria | - |
| Terriglobus | roseus | 1 | bacteria | - |
| ORC_Beijerinckiaceae | spe | 1 | bacteria | Alphaproteobacteria |
| Beggiatoa | species | 1 | Bacteria | Gammaproteobacteria |
| Burkholderia | crenata | 1 | BACTERIA | NULL |
| Burkholderia | umbellata | 4 | BACTERIA | NULL |
| Escherichia | coli | 8 | BACTERIA | NULL |
| Phenylobacterium | spe | 2 | bacteria | NULL |
| Sphingobium | michaelis | 11 | BACTERIA | NULL |
| Guillardia | theta | 16 | Cryptophyceae | Pyrenomonadales |
| Negleria | gruberi | 5 | DIS | Heteroloboseans |
| Trypanosoma | brucei | 1 | Discoba | Euglenozoa |
| Triticum | aestivum | 369 | Embryophyta | Streptophyta |
| Ampelomyces | quisqualis | 1 | Fungi | - |
| Articulospora | tetracladia | 2 | Fungi | - |
| Aspergillus | niger | 1 | Fungi | - |
| Bryoria | nadvornikiana | 3 | Fungi | - |
| Cenococcum | geophilum | 13 | Fungi | - |
| Cladonia | rangiformis | 6 | Fungi | - |
| Cladonia | squamosa | 1 | Fungi | - |
| Cladonia | uncialis | 2 | Fungi | - |
| Penicillium | solitum | 1 | Fungi | - |
| Puccinia | graminis | 1 | Fungi | - |
| Rhizoplaca | subdiscrepans | 1 | Fungi | - |
| Umbilicaria | torrefacta | 1 | Fungi | - |
| Microsporum | gypseum | 1 | Fungi | Eurotiomycetes |
| Cladonia | arbuscula | 1 | Fungi | Lecanorales |
| Cladonia | bellidiflora | 1 | Fungi | Lecanorales |
| Cladonia | caespiticia | 1 | Fungi | Lecanorales |
| Cladonia | cariosa | 1 | Fungi | Lecanorales |
| Cladonia | cenotea | 1 | Fungi | Lecanorales |
| Cladonia | cervicornis | 1 | Fungi | Lecanorales |
| Cladonia | chlorophaea | 1 | Fungi | Lecanorales |
| Cladonia | coccifera | 1 | Fungi | Lecanorales |
| Cladonia | coniocraea | 1 | Fungi | Lecanorales |
| Cladonia | convoluta | 1 | Fungi | Lecanorales |
| Cladonia | cornuta | 1 | Fungi | Lecanorales |
| Cladonia | crispata | 1 | Fungi | Lecanorales |
| Cladonia | fimbriata | 1 | Fungi | Lecanorales |
| Cladonia | foliacea | 1 | Fungi | Lecanorales |
| Cladonia | furcata | 1 | Fungi | Lecanorales |
| Cladonia | gracilis | 1 | Fungi | Lecanorales |
| Cladonia | humilis | 2 | Fungi | Lecanorales |
| Cladonia | luteoalba | 1 | Fungi | Lecanorales |
| Cladonia | mitis | 1 | Fungi | Lecanorales |
| Cladonia | pleurota | 1 | Fungi | Lecanorales |
| Cladonia | pocillum | 1 | Fungi | Lecanorales |
| Cladonia | pyxidata | 1 | Fungi | Lecanorales |
| Cladonia | rei | 1 | Fungi | Lecanorales |
| Cladonia | scabriuscula | 1 | Fungi | Lecanorales |
| Cladonia | stellaris | 1 | Fungi | Lecanorales |
| Cladonia | stygia | 1 | Fungi | Lecanorales |
| Cladonia | subtenuis | 1 | Fungi | Lecanorales |
| Cladonia | subturgida | 1 | Fungi | Lecanorales |
| Cladonia | subulata | 1 | Fungi | Lecanorales |
| Cladonia | symphycarpia | 1 | Fungi | Lecanorales |
| Cladonia | verticillata | 1 | Fungi | Lecanorales |
| Lecanora | argentata | 1 | Fungi | Lecanorales |
| Lecanora | atra | 1 | Fungi | Lecanorales |
| Lecanora | chlarotera | 1 | Fungi | Lecanorales |
| Lecanora | formosa | 1 | Fungi | Lecanorales |
| Lecanora | fuscobrunnea | 1 | Fungi | Lecanorales |
| Lecanora | intricata | 1 | Fungi | Lecanorales |
| Lecanora | muralis | 1 | Fungi | Lecanorales |
| Lecanora | parahelva | 1 | Fungi | Lecanorales |
| Lecanora | polytropa | 2 | Fungi | Lecanorales |
| Lecanora | pulicaris | 1 | Fungi | Lecanorales |
| Lecanora | rupicola | 1 | Fungi | Lecanorales |
| Lecanora | subintricata | 1 | Fungi | Lecanorales |
| Lecanora | subravida | 1 | Fungi | Lecanorales |
| Lecanora | subsaligna | 1 | Fungi | Lecanorales |
| Lecanora | varia | 1 | Fungi | Lecanorales |
| Cladonia | macilenta | 1 | Fungi | Lecanoromycetes |
| Cladonia | rangiferina | 87 | Fungi | Lecanoromycetes |
| Zymoseptoria | tritici | 3 | Fungi | Leotiomyceta |
| Botrytis | cinerea | 1 | Fungi | Leotiomycetes |
| Phialocephala | fortinii | 11 | Fungi | Leotiomycetes |
| Rhizopus | delemar | 1 | Fungi | Mucoromycota |
| Aspergillus | oryzae | 1 | Fungi | NULL |
| Chaetomium | globosum | 1 | Fungi | NULL |
| Cladonia | portentosa | 1 | Fungi | NULL |
| Erysiphe | pisi | 1 | Fungi | NULL |
| Fusarium | verticillioides | 1 | Fungi | NULL |
| Golovinomyces | orontii | 1 | Fungi | NULL |
| Paracoccidioides | brasiliensis | 1 | Fungi | NULL |
| Saccharomyces | cerevisiae | 11 | Fungi | NULL |
| Schizosaccharomyces | octosporus | 1 | Fungi | NULL |
| Stagonospora | nodorum | 1 | Fungi | NULL |
| Uncinocarpus | reesii | 1 | Fungi | NULL |
| Verticillium | albo-atrum | 1 | Fungi | NULL |
| Candida | albicans | 1 | Fungi | Saccharomycetales |
| Magnaporthe | grisea | 6 | Fungi | Sordariomycetes |
| Neurospora | crassa | 1 | Fungi | Sordariomycetes |
| Emiliania | huxleyi | 40 | Haptista | Haptophyta |
| Giardia | lamblia | 19 | Metamonada | Fornicata |
| Trichomonas | vaginalis | 1 | Metamonada | Parabasalia |
| Neogobius | melanostomus | 138 | Metazoa | Actinopterygii |
| Branchiostoma | floridae | 2 | Metazoa | Chordata |
| Strongylocentrotus | purpuratus | 2 | Metazoa | Echinozoa |
| Acyrthosiphon | pisum | 2 | Metazoa | Insecta |
| Aedes | aegypti | 1 | Metazoa | insecta |
| Drosophila | ananassae | 1 | Metazoa | Insecta |
| Drosophila | willistoni | 2 | Metazoa | Insecta |
| Caenorhabditis | elegans | 11 | Metazoa | Invertebrata |
| Drosophila | melanogaster | 6 | Metazoa | Invertebrata |
| Homo | sapiens | 2 | Metazoa | Vertebrata |
| Monosiga | brevicollis | 1 | Opisthokonta | Choanoflagellata |
| Chloroplast | Hordeum_vulgare | 2 | Organelle | Chloroplast |
| Mitochondrion | Oryza_sativa | 1 | Organelle | Mitochondrion |
| Mitochondrion | Phialocephala_subalpina | 1 | Organelle | Mitochondrion |
| Acutodesmus | obliquus | 1 | planta | Chlorophycea |
| Ankistrodesmus | falcatus | 1 | planta | Chlorophycea |
| Asterarcys | quadricellulare | 1 | planta | Chlorophycea |
| Astrephomene | gubernaculifera | 1 | planta | Chlorophycea |
| Bracteacoccus | bullatus | 1 | planta | Chlorophycea |
| Bracteacoccus | minor | 1 | planta | Chlorophycea |
| Chlamydomonas | allensworthii | 1 | planta | Chlorophycea |
| Chlamydomonas | applanata | 1 | planta | Chlorophycea |
| Chlorococcum | oleofaciens | 1 | planta | Chlorophycea |
| Chloromonas | reticulata | 1 | planta | Chlorophycea |
| Chlorosarcinopsis | eremi | 1 | planta | Chlorophycea |
| Chromochloris | zofingiensis | 1 | planta | Chlorophycea |
| Coelastrella | aeroterrestrica | 1 | planta | Chlorophycea |
| Coelastrella | oocystiformis | 1 | planta | Chlorophycea |
| Desmodesmus | abundans | 1 | planta | Chlorophycea |
| Desmodesmus | armatus | 1 | planta | Chlorophycea |
| Desmodesmus | communis | 1 | planta | Chlorophycea |
| Dunaliella | parva | 1 | planta | Chlorophycea |
| Dunaliella | salina | 1 | planta | Chlorophycea |
| Dunaliella | viridis | 1 | planta | Chlorophycea |
| Edaphochlamys | debaryana | 1 | planta | Chlorophycea |
| Eudorina | cylindrica | 1 | planta | Chlorophycea |
| Eudorina | unicocca | 1 | planta | Chlorophycea |
| Gonium | pectorale | 1 | planta | Chlorophycea |
| Gonium | quadratum | 1 | planta | Chlorophycea |
| Gonium | sociale | 1 | planta | Chlorophycea |
| Haematococcus | lacustris | 1 | planta | Chlorophycea |
| Hariotina | reticulata | 1 | planta | Chlorophycea |
| Limnomonas | gaiensis | 1 | planta | Chlorophycea |
| Neocystis | mucosa | 1 | planta | Chlorophycea |
| Pectinodesmus | pectinatus | 1 | planta | Chlorophycea |
| Pediastrum | duplex | 1 | planta | Chlorophycea |
| Pleurastrum | rubrioleum | 1 | planta | Chlorophycea |
| Pseudomuriella | schumacherensis | 1 | planta | Chlorophycea |
| Pseudopediastrum | boryanum | 1 | planta | Chlorophycea |
| Stauridium | tetras | 1 | planta | Chlorophycea |
| Tetradesmus | bajacalifornicus | 1 | planta | Chlorophycea |
| Tetradesmus | dimorphus | 1 | planta | Chlorophycea |
| Tetradesmus | obliquus | 1 | planta | Chlorophycea |
| Yamagishiella | unicocca | 1 | planta | Chlorophycea |
| Arabidopsis | lyrata | 3 | Planta | Dicots |
| Pinus | tabuliformis | 4 | planta | gymnosperm |
| Zingiber | officinale | 5 | Planta | Monocot |
| Ananas | comosus | 1 | Planta | Monocots |
| Streptochaeta | angustifolia | 2 | Planta | Monocots |
| Agarum | clathratum | 1 | Planta | Phaeophyceae |
| Alaria | esculenta | 1 | Planta | Phaeophyceae |
| Alaria | marginata | 1 | Planta | Phaeophyceae |
| Ascophyllum | nodosum | 1 | Planta | Phaeophyceae |
| Chorda | asiatica | 1 | Planta | Phaeophyceae |
| Chorda | filum | 1 | Planta | Phaeophyceae |
| Chorda | rigida | 1 | Planta | Phaeophyceae |
| Chordaria | chordaeformis | 1 | Planta | Phaeophyceae |
| Chordaria | flagelliformis | 1 | Planta | Phaeophyceae |
| Colpomenia | peregrina | 1 | Planta | Phaeophyceae |
| Colpomenia | sinuosa | 1 | Planta | Phaeophyceae |
| Costaria | costata | 1 | Planta | Phaeophyceae |
| Ecklonia | radiata | 1 | Planta | Phaeophyceae |
| Elachista | tenuis | 1 | Planta | Phaeophyceae |
| Endarachne | binghamiae | 1 | Planta | Phaeophyceae |
| Fucus | distichus | 1 | Planta | Phaeophyceae |
| Fucus | serratus | 1 | Planta | Phaeophyceae |
| Fucus | spiralis | 1 | Planta | Phaeophyceae |
| Fucus | vesiculosus | 1 | Planta | Phaeophyceae |
| Hedophyllum | nigripes | 1 | Planta | Phaeophyceae |
| Lessonia | nigrescens | 1 | Planta | Phaeophyceae |
| Lessonia | variegata | 1 | Planta | Phaeophyceae |
| Papenfussiella | kuromo | 1 | Planta | Phaeophyceae |
| Petalonia | fascia | 1 | Planta | Phaeophyceae |
| Petalonia | tatewakii | 1 | Planta | Phaeophyceae |
| Saccharina | angustata | 1 | Planta | Phaeophyceae |
| Saccharina | japonica | 1 | Planta | Phaeophyceae |
| Saccharina | latissima | 1 | Planta | Phaeophyceae |
| Saccharina | sessilis | 1 | Planta | Phaeophyceae |
| Sargassum | fusiforme | 1 | Planta | Phaeophyceae |
| Sargassum | ilicifolium | 1 | Planta | Phaeophyceae |
| Sirophysalis | trinodis | 1 | Planta | Phaeophyceae |
| Sphaerotrichia | divaricata | 1 | Planta | Phaeophyceae |
| Avena | insularis | 5 | Planta | Poaceae |
| Avena | longiglumis | 3 | Planta | Poaceae |
| Pharus | latifolius | 2 | Planta | Poaceae |
| Juncus | effusus | 2 | Planta | Poales |
| Lolium | multiflorum | 3 | Planta | Pooideae |
| Asterochloris | antarctica | 1 | Planta | Trebouxiaceae |
| Asterochloris | echinata | 1 | Planta | Trebouxiaceae |
| Asterochloris | erici | 1 | Planta | Trebouxiaceae |
| Asterochloris | excentrica | 1 | Planta | Trebouxiaceae |
| Asterochloris | friedlii | 1 | Planta | Trebouxiaceae |
| Asterochloris | gaertneri | 1 | Planta | Trebouxiaceae |
| Asterochloris | glomerata | 1 | Planta | Trebouxiaceae |
| Asterochloris | irregularis | 1 | Planta | Trebouxiaceae |
| Asterochloris | italiana | 1 | Planta | Trebouxiaceae |
| Asterochloris | leprarii | 1 | Planta | Trebouxiaceae |
| Asterochloris | lobophora | 1 | Planta | Trebouxiaceae |
| Asterochloris | magna | 1 | Planta | Trebouxiaceae |
| Asterochloris | pseudoirregularis | 1 | Planta | Trebouxiaceae |
| Asterochloris | sejongensis | 1 | Planta | Trebouxiaceae |
| Asterochloris | stereocaulonicola | 1 | Planta | Trebouxiaceae |
| Asterochloris | woessiae | 1 | Planta | Trebouxiaceae |
| Trebouxia | angustilobata | 1 | Planta | Trebouxiaceae |
| Trebouxia | anticipata | 1 | Planta | Trebouxiaceae |
| Trebouxia | arboricola | 1 | Planta | Trebouxiaceae |
| Trebouxia | asymmetrica | 1 | Planta | Trebouxiaceae |
| Trebouxia | corticola | 1 | Planta | Trebouxiaceae |
| Trebouxia | crenulata | 1 | Planta | Trebouxiaceae |
| Trebouxia | cretacea | 1 | Planta | Trebouxiaceae |
| Trebouxia | decolorans | 1 | Planta | Trebouxiaceae |
| Trebouxia | flava | 1 | Planta | Trebouxiaceae |
| Trebouxia | gelatinosa | 1 | Planta | Trebouxiaceae |
| Trebouxia | gigantea | 1 | Planta | Trebouxiaceae |
| Trebouxia | higginsiae | 1 | Planta | Trebouxiaceae |
| Trebouxia | impressa | 1 | Planta | Trebouxiaceae |
| Trebouxia | incrustata | 1 | Planta | Trebouxiaceae |
| Trebouxia | jamesii | 1 | Planta | Trebouxiaceae |
| Trebouxia | maresiae | 1 | Planta | Trebouxiaceae |
| Trebouxia | simplex | 1 | Planta | Trebouxiaceae |
| Trebouxia | suecica | 1 | Planta | Trebouxiaceae |
| Trebouxia | vagua | 1 | Planta | Trebouxiaceae |
| Pseudochlorella | pringsheimii | 1 | Plantae | algae |
| Physcomitrella | patens | 6 | Plantae | Bryophyta |
| Chlamydomonas | reinhardtii | 1 | Plantae | Chlorophyta |
| Chenopodium | pamiricum | 1 | Plantae | dicots |
| Arabidopsis | thaliana | 22 | Plantae | Dicotyledons |
| Metrosideros | polymorpha | 81 | Plantae | Dicotyledons |
| Populus | trichocarpa | 2 | Plantae | Dicotyledons |
| Aegilops | speltoides | 4 | Plantae | Monocotyledons |
| Aegilops | tauschii | 12 | Plantae | Monocotyledons |
| Brachypodium | distachyon | 278 | Plantae | Monocotyledons |
| Hordeum | vulgare | 337 | Plantae | Monocotyledons |
| Lolium | perenne | 24 | Plantae | Monocotyledons |
| Oryza | glaberrima | 87 | Plantae | Monocotyledons |
| Oryza | sativa | 203 | Plantae | Monocotyledons |
| Secale | cereale | 49 | Plantae | Monocotyledons |
| Sorghum | bicolor | 30 | Plantae | Monocotyledons |
| Triticeae | species | 55 | Plantae | Monocotyledons |
| Triticum | durum | 17 | Plantae | Monocotyledons |
| Triticum | monococcum | 55 | Plantae | Monocotyledons |
| Triticum | urartu | 3 | Plantae | Monocotyledons |
| Zea | mays | 33 | Plantae | Monocotyledons |
| Pinus | wallichiana | 1 | Plantae | NULL |
| Panicum | hallii | 7 | Plantae | Panicoideae |
| Paspallum | notatum | 8 | Plantae | Panicoideae |
| Avena | atlantica | 3 | Plantae | Pooideae |
| Avena | eriantha | 3 | Plantae | Pooideae |
| Avena | sativa | 28 | Plantae | Pooideae |
| Asterochloris | phycobiontica | 2 | Plantae | Trebouxiaceae |
| Trebouxia | species | 1 | Plantae | Trebouxiaceae |
| Asterochloris | mediterranea | 51 | Plantae | Trebouxiales |
| Volvox | carteri | 1 | Plantae | Vcar |
| Perkinsus | marinus | 7 | Sar | Alveolata |
| Phytophthora | infestans | 27 | Sar | Oomycota |
| Ectocarpus | crouaniorum | 1 | Sar | Stramenopiles |