TREP, the TRansposable Elements Platform
nrTREP contains sequences from the following genera and species
Click on hyperlinks to download individual subsets for genus or species (in FASTA format).
| Genus | Species | Total elements | Taxo1 | Taxo2 |
|---|---|---|---|---|
| Perkinsus | marinus | 7 | Alveolates | Alveolata |
| Entamoeba | histolytica | 2 | Amoebozoans | Archamoebae |
| Dictyostelium | purpureum | 7 | Amoebozoans | Mycetozoa |
| Neogobius | melanostomus | 69 | ANIMALIA | Actinopterygii |
| Caenorhabditis | elegans | 11 | ANIMALIA | Invertebrata |
| Drosophila | melanogaster | 6 | ANIMALIA | Invertebrata |
| Homo | sapiens | 1 | ANIMALIA | Vertebrata |
| Burkholderia | crenata | 1 | BACTERIA | NULL |
| Burkholderia | umbellata | 4 | BACTERIA | NULL |
| Escherichia | coli | 6 | BACTERIA | NULL |
| Sphingobium | michaelis | 11 | BACTERIA | NULL |
| Guillardia | theta | 16 | Chromalveolates | Cryptophyta |
| Emiliania | huxlei | 40 | Chromalveolates | Haptophyceae |
| Blumeria | graminis_hordei | 8 | FUNGI | Leotiomycetes |
| Blumeria | graminis_tritici | 221 | FUNGI | Leotiomycetes |
| Phialocephala | fortinii | 10 | FUNGI | Leotiomycetes |
| Zymoseptoria | tritici | 3 | FUNGI | Leotiomycetes |
| Aspergillus | oryzae | 1 | FUNGI | NULL |
| Saccharomyces | cerevisiae | 9 | FUNGI | NULL |
| Magnaporthe | grisea | 5 | FUNGI | Sordariomycetes |
| Neurospora | crassa | 1 | FUNGI | Sordariomycetes |
| Trypanosoma | brucei | 1 | JEH | Euglenozoans |
| Negleria | gruberi | 5 | JEH | Heteroloboseans |
| Unknown | unknown | 3 | NULL | NULL |
| Physcomitrella | patens | 4 | PLANTAE | Bryophyta |
| Arabidopsis | thaliana | 5 | PLANTAE | Dicotyledons |
| Metrosideros | polymorpha | 81 | PLANTAE | Dicotyledons |
| Populus | trichocarpa | 2 | PLANTAE | Dicotyledons |
| Aegilops | speltoides | 2 | PLANTAE | Monocotyledons |
| Aegilops | tauschii | 11 | PLANTAE | Monocotyledons |
| Brachypodium | distachyon | 210 | PLANTAE | Monocotyledons |
| Hordeum | vulgare | 298 | PLANTAE | Monocotyledons |
| Oryza | glaberrima | 87 | PLANTAE | Monocotyledons |
| Oryza | sativa | 190 | PLANTAE | Monocotyledons |
| Secale | cereale | 17 | PLANTAE | Monocotyledons |
| Sorghum | bicolor | 26 | PLANTAE | Monocotyledons |
| Triticum | aestivum | 286 | PLANTAE | Monocotyledons |
| Triticum | durum | 17 | PLANTAE | Monocotyledons |
| Triticum | monococcum | 45 | PLANTAE | Monocotyledons |
| Triticum | unknown | 57 | PLANTAE | Monocotyledons |
| Triticum | urartu | 3 | PLANTAE | Monocotyledons |
| Zea | mays | 29 | PLANTAE | Monocotyledons |
| Giardia | lamblia | 19 | POD | Diplomonads |
| Trichomonas | vaginalis | 1 | POD | Parabasalids |
| Phytophthora | infestans | 28 | Stramenopiles | Oomycetes |