TREP, the TRansposable Elements Platform
PTREP contains sequences from the following genera and species
Click on hyperlinks to download individual subsets for genus or species (in FASTA format).
| Genus | Species | Total elements | Taxo1 | Taxo2 |
|---|---|---|---|---|
| Alexandrium | tamaresea | 2 | Alveolates | Alveolata |
| Perkinsus | marinus | 8 | Alveolates | Alveolata |
| Entamoeba | histolytica | 1 | Amoebozoans | Archamoebae |
| Dictyostelium | purpureum | 15 | Amoebozoans | Mycetozoa |
| Caenorhabditis | elegans | 8 | ANIMALIA | Invertebrata |
| Drosophila | melanogaster | 12 | ANIMALIA | Invertebrata |
| Homo | sapiens | 5 | ANIMALIA | Vertebrata |
| Corynebacterium | glutamicum | 1 | BACTERIA | |
| Mesorhizobium | loti | 1 | BACTERIA | |
| Burkholderia | crenata | 1 | BACTERIA | NULL |
| Burkholderia | umbellata | 2 | BACTERIA | NULL |
| Escherichia | coli | 5 | BACTERIA | NULL |
| Sphingobium | michaelis | 13 | BACTERIA | NULL |
| Shigella | flexneri | 1 | BACTERIA | Proteobacteria |
| Guillardia | theta | 14 | Chromalveolates | Cryptophyta |
| Emiliania | huxlei | 23 | Chromalveolates | Haptophyceae |
| Blumeria | graminis_hordei | 15 | FUNGI | Leotiomycetes |
| Blumeria | graminis_tritici | 164 | FUNGI | Leotiomycetes |
| Aspergillus | oryzae | 1 | FUNGI | NULL |
| Saccharomyces | cerevisiae | 13 | FUNGI | NULL |
| Magnaporthe | grisea | 3 | FUNGI | Sordariomycetes |
| Trypanosoma | brucei | 1 | JEH | Euglenozoans |
| Negleria | gruberi | 15 | JEH | Heteroloboseans |
| Unknown | unknown | 7 | NULL | NULL |
| Monosiga | brevicollis | 3 | Opisthokonta | Choanoflagellida |
| Physcomitrella | patens | 1 | PLANTAE | Bryophyta |
| Arabidopsis | thaliana | 8 | PLANTAE | Dicotyledons |
| Beta | vulgaris | 2 | PLANTAE | Dicotyledons |
| Brassica | napus | 2 | PLANTAE | Dicotyledons |
| Lotus | japonicus | 2 | PLANTAE | Dicotyledons |
| Medicago | truncatula | 2 | PLANTAE | Dicotyledons |
| Nicotiana | tabacum | 3 | PLANTAE | Dicotyledons |
| Solanum | tuberosum | 2 | PLANTAE | Dicotyledons |
| Tarenaya | hassleriana | 4 | PLANTAE | Dicotyledons |
| Theobroma | cacao | 2 | PLANTAE | Dicotyledons |
| Brachypodium | distachyon | 98 | PLANTAE | Monocotyledons |
| Hordeum | vulgare | 96 | PLANTAE | Monocotyledons |
| Oryza | glaberrima | 3 | PLANTAE | Monocotyledons |
| Oryza | sativa | 62 | PLANTAE | Monocotyledons |
| Secale | cereale | 5 | PLANTAE | Monocotyledons |
| Sorghum | bicolor | 6 | PLANTAE | Monocotyledons |
| Triticum | aestivum | 39 | PLANTAE | Monocotyledons |
| Triticum | durum | 7 | PLANTAE | Monocotyledons |
| Triticum | monococcum | 36 | PLANTAE | Monocotyledons |
| Triticum | unknown | 38 | PLANTAE | Monocotyledons |
| Triticum | urartu | 1 | PLANTAE | Monocotyledons |
| Zea | mays | 19 | PLANTAE | Monocotyledons |
| Giardia | lamblia | 8 | POD | Diplomonads |
| Trichomonas | vaginalis | 1 | POD | Parabasalids |
| Rhizaria | unknown | 6 | Rhizaria | Amoeboids |
| Phytophthora | infestans | 13 | Stramenopiles | Oomycetes |