TREP, the TRansposable Elements Platform
PTREP contains sequences from the following genera and species
Click on hyperlinks to download individual subsets for genus or species (in FASTA format).
| Genus | Species | Total elements | Taxo1 | Taxo2 |
|---|---|---|---|---|
| Sus | scrofa | 8 | Aminalia | Mammalia |
| Dictyostelium | discoideum | 1 | Amoebozoa | Evosea |
| Dictyostelium | pupureum | 12 | Amoebozoa | Evosea |
| Entamoeba | histolytica | 1 | Amoebozoa | Evosea |
| Mastigamoeba | balamuthi | 1 | Amoebozoa | Evosea |
| Vermamoeba | vermiformis | 1 | Amoebozoa | Tubulinea |
| Halobaculum | magnesiiphilum | 2 | Archaea | Haloferacaceae |
| Archaea | species | 5 | Archaea | Species |
| Parastagonospora | nodorum | 1 | Ascomycota | Dothideomycetes |
| Aspergillus | calidoustus | 2 | Ascomycota | Eurotiomycetes |
| Blumeria | graminis_hordei | 15 | Ascomycota | Leotiomycetes |
| Blumeria | graminis_tritici | 396 | Ascomycota | Leotiomycetes |
| Paraphoma | chrysanthemicola | 2 | Ascomycota | Pleosporales |
| Setosphaeria | turcica | 2 | Ascomycota | Pleosporales |
| Corynebacterium | glutamicum | 1 | BACTERIA | |
| Mesorhizobium | loti | 1 | BACTERIA | |
| Acidobacteriota | species | 2 | Bacteria | Acidobacteriota |
| Actinobacteria | species | 8 | Bacteria | Actinobacteria |
| Alphaproteobacteria | species | 14 | Bacteria | Alphaproteobacteria |
| Betaproteobacteria | species | 5 | Bacteria | Betaproteobacteria |
| Campylobacterota | species | 1 | Bacteria | Campylobacterota |
| Deltaproteobacteria | species | 1 | Bacteria | Deltaproteobacteria |
| Beggiatoa | species | 2 | Bacteria | Gammaproteobacteria |
| Gammaproteobacteria | species | 11 | Bacteria | Gammaproteobacteria |
| Myxococcota | species | 2 | Bacteria | Myxococcota |
| Burkholderia | crenata | 1 | BACTERIA | NULL |
| Burkholderia | umbellata | 2 | BACTERIA | NULL |
| Escherichia | coli | 5 | BACTERIA | NULL |
| Sphingobium | michaelis | 13 | BACTERIA | NULL |
| Shigella | flexneri | 1 | Bacteria | Proteobacteria |
| Spirochaetes | species | 2 | Bacteria | Spirochaetes |
| Allomyces | macrogynus | 1 | Blastocladiomyceta | Blastocladiomycetes |
| Ulva | prolifera | 2 | Chlorophyta | Chlorophyta |
| Guillardia | theta | 14 | Cryptophyceae | Pyrenomonadales |
| Storeatula | major | 1 | Cryptophyceae | Pyrenomonadales |
| Negleria | gruberi | 15 | DIS | Heteroloboseans |
| Trypanosoma | brucei | 1 | Discoba | Euglenozoa |
| Trypanosoma | melophagium | 1 | Discoba | Euglenozoa |
| Naegleria | lovaniensis | 3 | Discoba | Heterolobosea |
| Dendrobium | nobile | 1 | Embryophyta | Streptophyta |
| Triticum | aestivum | 103 | Embryophyta | Streptophyta |
| Cenococcum | geophilum | 69 | Fungi | - |
| Cladonia | rangiformis | 3 | Fungi | - |
| Cladonia | rangiferina | 46 | Fungi | Lecanoromycetes |
| Aspergillus | oryzae | 1 | Fungi | NULL |
| Saccharomyces | cerevisiae | 13 | Fungi | NULL |
| Magnaporthe | grisea | 3 | Fungi | Sordariomycetes |
| Chrysochromulina | tobinii | 1 | Haptista | Haptophyta |
| Emiliania | huxleyi | 24 | Haptista | Haptophyta |
| Prymnesium | parvum | 3 | Haptista | Haptophyta |
| Giardia | lamblia | 8 | Metamonada | Fornicata |
| Trichomonas | vaginalis | 1 | Metamonada | Parabasalia |
| Monocercomonoides | exilis | 1 | Metamonada | Preaxostyla |
| Danio | rerio | 1 | Metazoa | Actinopterygii |
| Mantis | religiosa | 10 | Metazoa | Arthropoda |
| Eyprepocnemis | plorans | 1 | Metazoa | Chelicerata |
| Limulus | polyphemus | 1 | Metazoa | Chelicerata |
| Ambystoma | mexicanum | 1 | Metazoa | Chordata |
| Branchiostoma | floridae | 2 | Metazoa | Chordata |
| Canis | lupus_familiaris | 4 | Metazoa | Chordata |
| Aurelia | coerulea | 22 | Metazoa | Cnidaria |
| Strongylocentrotus | purpuratus | 2 | Metazoa | Echinozoa |
| Acyrthosiphon | pisum | 2 | Metazoa | Insecta |
| Aedes | aegypti | 3 | Metazoa | insecta |
| Bactrocera | tryoni | 1 | Metazoa | Insecta |
| Drosophila | ananassae | 1 | Metazoa | Insecta |
| Drosophila | willistoni | 2 | Metazoa | Insecta |
| Musca | domestica | 1 | Metazoa | Insecta |
| Vipera | ammodytes | 1 | Metazoa | Insecta |
| Caenorhabditis | elegans | 9 | Metazoa | Invertebrata |
| Drosophila | melanogaster | 15 | Metazoa | Invertebrata |
| Pecari | maximus | 1 | Metazoa | Mammalia |
| Rattus | norvegicus | 1 | Metazoa | Mammalia |
| Schistosoma | mansoni | 1 | Metazoa | Platyhelminthes |
| Aiolochroia | crassa | 20 | Metazoa | Porifera |
| Gallus | gallus | 1 | Metazoa | Vertebrata |
| Homo | sapiens | 6 | Metazoa | Vertebrata |
| Claviceps | purpurea | 2 | Opisthokonta | Ascomycota |
| Boletus | edulis | 1 | Opisthokonta | Basidiomycota |
| Psilocybe | cubensis | 1 | Opisthokonta | Basidiomycota |
| Monosiga | brevicollis | 5 | Opisthokonta | Choanoflagellata |
| Salpingoeca | rosetta | 1 | Opisthokonta | Choanoflagellata |
| Capsaspora | owczarzaki | 6 | Opisthokonta | Filasterea |
| Arabidopsis | lyrata | 1 | Planta | Dicots |
| Pinus | tabuliformis | 4 | planta | gymnosperm |
| Amborella | trichopoda | 1 | Plantae | Amborellales |
| Physcomitrella | patens | 1 | Plantae | Bryophyta |
| Solanum | tuberosum | 1 | Plantae | dicots |
| Arabidopsis | thaliana | 13 | Plantae | Dicotyledons |
| Beta | vulgaris | 1 | Plantae | Dicotyledons |
| Brassica | napus | 6 | Plantae | Dicotyledons |
| Lotus | japonicus | 1 | Plantae | Dicotyledons |
| Medicago | truncatula | 1 | Plantae | Dicotyledons |
| Nicotiana | tabacum | 3 | Plantae | Dicotyledons |
| Tarenaya | hassleriana | 3 | Plantae | Dicotyledons |
| Theobroma | cacao | 1 | Plantae | Dicotyledons |
| Aegilops | speltoides | 2 | Plantae | Monocotyledons |
| Aegilops | tauschii | 2 | Plantae | Monocotyledons |
| Brachypodium | distachyon | 112 | Plantae | Monocotyledons |
| Hordeum | vulgare | 101 | Plantae | Monocotyledons |
| Lolium | perenne | 1 | Plantae | Monocotyledons |
| Oryza | glaberrima | 3 | Plantae | Monocotyledons |
| Oryza | sativa | 63 | Plantae | Monocotyledons |
| Secale | cereale | 73 | Plantae | Monocotyledons |
| Sorghum | bicolor | 7 | Plantae | Monocotyledons |
| Triticeae | species | 37 | Plantae | Monocotyledons |
| Triticum | durum | 7 | Plantae | Monocotyledons |
| Triticum | monococcum | 45 | Plantae | Monocotyledons |
| Triticum | urartu | 1 | Plantae | Monocotyledons |
| Zea | mays | 19 | Plantae | Monocotyledons |
| Paspallum | notatum | 4 | Plantae | Panicoideae |
| Avena | sativa | 4 | Plantae | Pooideae |
| Asterochloris | mediterranea | 4 | Plantae | Trebouxiales |
| Rhizaria | species | 4 | Rhizaria | Amoeboids |
| Cyanidiococcus | yangmingsha | 2 | Rhodophyta | Bangiophyceae |
| Porphyra | umbilicalis | 11 | Rhodophyta | Bangiophyceae |
| Porphyridium | purpureum | 4 | Rhodophyta | Bangiophyceae |
| Pyropia | yezoensis | 18 | Rhodophyta | Bangiophyceae |
| Agarophyton | chilense | 3 | Rhodophyta | Florideophyceae |
| Chondrus | crispus | 23 | Rhodophyta | Florideophyceae |
| Gracilaria | domingensis | 10 | Rhodophyta | Florideophyceae |
| Gracilariopsis | chorda | 7 | Rhodophyta | Florideophyceae |
| Kappaphycus | striatus | 4 | Rhodophyta | Florideophyceae |
| Palmaria | palmate | 7 | Rhodophyta | Florideophyceae |
| Rhodosorus | marinus | 2 | Rhodophyta | Stylonematophyceae |
| Alexandrium | tamaresea | 2 | Sar | Alveolata |
| Perkinsus | marinus | 8 | Sar | Alveolata |
| Plasmodium | falciparum | 1 | Sar | Apicomplexa |
| Chaetoceros | tenuissimus | 3 | Sar | Bacillariophyta |
| Craspedostauros | australis | 4 | Sar | Bacillariophyta |
| Cyclotella | cryptica | 1 | Sar | Bacillariophyta |
| Epithemia | pelagica | 4 | Sar | Bacillariophyta |
| Fragilaria | crotonensis | 4 | Sar | Bacillariophyta |
| Fragilariopsis | cylindrus | 1 | Sar | Bacillariophyta |
| Mayamaea | pseudoterrestris | 3 | Sar | Bacillariophyta |
| Psammoneis | japonica | 2 | Sar | Bacillariophyta |
| Thalassiosira | pseudonana | 2 | Sar | Bacillariophyta |
| Parietichytrium | sp. | 3 | Sar | Bigyra |
| Proteromonas | lacertae | 1 | Sar | Bigyra |
| Ochromonas | danica | 1 | Sar | Chrysophyceae |
| Breviolum | minutum | 2 | Sar | Dinophyceae |
| Cladocopium | goreaui | 3 | Sar | Dinophyceae |
| Marteilia | pararefringens | 1 | Sar | Endomyxa |
| Polymyxa | betae | 1 | Sar | Endomyxa |
| Aphanomyces | cochlioides | 2 | Sar | Oomycota |
| Globisporangium | splendens | 1 | Sar | Oomycota |
| Phytophthora | infestans | 13 | Sar | Oomycota |
| Phytophthora | ramorum | 2 | Sar | Oomycota |
| Chrysophaeum | taylorii | 1 | Sar | Pelagophyceae |
| Undaria | pinnatifida | 1 | Sar | Phaeophyceae |
| Nitzschia | inconspicua | 4 | Sar | Stramenopiles |
| Nitzschia | sp. | 1 | Sar | Stramenopiles |