TREP, the TRansposable Elements Platform

Superfamily Ngaro                   RYN

Full classification: Retrotransposon, LTR, Ngaro

Ngaro elements are Class 1 transposons.

They are relatively rare. Were found in fungi and some other eukaryotes, but not in animals and plants. Upon insertion, they create a 0 bp Target site duplication (TSD).

Structure of Ngaro elements

Sequence domains

LTR: Long terminal repeat
Function: Contains promoter and terminator elements (dual function).
Protein motifs:

GAG: GAG protein
Function: Required as envelope of virus-like capsid
Protein motifs: CCHC

AP: Aspartic protease
Function:
Protein motifs:

RT: Reverse transcriptase
Function: Reverse transcription of mRNA to DNA, core motif is relatively variable (FY)(IAMV)DD
Protein motifs: YVDD

RH: RNAse H
Function:
Protein motifs: DEDD

YR: Tyrosine recombinase
Function:
Protein motifs:

YR: Tyrosine recombinase
Function:
Protein motifs:

LTR: Long terminal repeat
Function: Contains promoter and terminator elements (dual function).
Protein motifs:

LTR: Long terminal repeat
Function: Contains promoter and terminator elements (dual function).
Protein motifs:

LTR: Long terminal repeat
Function: Contains promoter and terminator elements (dual function).
Protein motifs:

0 Ngaro Download all 'RYN' elements in total_TREP database elements from the following taxa are in the total_TREP database:

Taxonomic group	Total elements

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