TREP, the TRansposable Elements Platform
Fasta file for Secale elements in total_TREP
Sequences: 168
Total size: 763783 bp
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| Sequence | Size |
|---|---|
| DTT_Scer_Hades_BE704509-1 Secale cereale; ; Stowaway MITE, complete element | 93 |
| DTT_Scer_Hades_BE704981-1 Secale cereale; ; Stowaway MITE, complete element | 47 |
| DTT_Scer_Hades_BF293216-1 Secale cereale; ; Stowaway MITE, complete element | 82 |
| DTT_Scer_Hades_BQ160399-1 Secale cereale; ; Stowaway MITE, complete element | 104 |
| RLC_Scer_WIS_X64101-1 Secale cereale; ; fragment of reverse transcriptase | 136 |
| RLC_Scer_WIS_X64100-1 Secale cereale; ; fragment 5' UTR and CDS | 576 |
| DTT_Scer_Icarus_BQ160561-1 Secale cereale; ; Stowaway MITE, complete element | 123 |
| DTT_Scer_Thalos_BQ160341-1 Secale cereale; ; Stowaway MITE, complete element | 158 |
| DTC_Scer_TAT1_AF492375-1 Secale cereale; ; fragment | 271 |
| DTC_Scer_TAT1_AF492376-1 Secale cereale; ; fragment | 271 |
| XXX_Scer_TaiI_AB077243-1 Secale cereale; ; tandem repeat, 1 unit | 569 |
| XXX_Scer_TaiI_AB077244-1 Secale cereale; ; tandem repeat, 1 unit | 568 |
| XXX_Scer_TaiI_AB077245-1 Secale cereale; ; tandem repeat, 1 unit | 567 |
| XXX_Scer_TaiI_AB077246-1 Secale cereale; ; tandem repeat, 1 unit | 568 |
| XXX_Scer_TaiI_AB077247-1 Secale cereale; ; tandem repeat, 1 unit | 566 |
| XXX_Scer_unnamed_J01264-1 Secale cereale; ; tandem repeat, 1 unit | 377 |
| RLG_Scer_Cereba_AB077375-1 Secale cereale; ; fragment | 512 |
| RLG_Scer_Cereba_AB077376-1 Secale cereale; ; fragment | 521 |
| XXX_Scer_unnamed_Z54189-2 Secale cereale; ; tandem repeat, 1 unit | 378 |
| XXX_Scer_unnamed_pSc1192-1 Secale cereale; ; tandem repeat, telomeric, 1 unit | 118 |
| XXX_Scer_unnamed_pSc1192-2 Secale cereale; ; tandem repeat, telomeric, 1 unit | 118 |
| XXX_Scer_unnamed_pSc1192-3 Secale cereale; ; tandem repeat, telomeric, 1 unit | 118 |
| TLC_Scer_Cent1_Z50040-1 Secale cereale; ; Centromeric tandem repeat | 476 |
| RLG_Scer_unnamed_AF222021-1 Secale cereale; ; fragment of 5' region | 3984 |
| XXX_Scer_unnamed_AB008923-1 Secale cereale; ; tandem repeat, extra heterochromatic, 1 unit | 1219 |
| XXX_Scer_unnamed_AB008922-1 Secale cereale; ; tandem repeat, extra heterochromatic, 1 unit | 1192 |
| XXX_Scer_unnamed_AB008924-1 Secale cereale; ; tandem repeat, extra heterochromatic, 1 unit | 1219 |
| XXX_Scer_unnamed_AB008925-1 Secale cereale; ; tandem repeat, extra heterochromatic, 1 unit | 1232 |
| RLC_Scer_Elena_AJ240111-1 Secale cereale; ; fragment of reverse transcriptase | 250 |
| RLC_Scer_unnamed_AJ240088-1 Secale cereale; ; fragment of reverse transciptase | 209 |
| RIX_Scer_unnamed_Y13390-1 Secale cereale; ; fragment of reverse transcriptase | 787 |
| XXX_Scer_unnamed_Z54189-1 Secale cereale; ; tandem repeat, 2 units | 747 |
| XXX_Scer_unnamed_Z50039-1 Secale cereale; ; tandem repeat, 2 partial units | 521 |
| DTT_Scer_Athos_BE587851-1 Secale cereale; ; Stowaway MITE, complete element | 81 |
| DTT_Scer_Athos_BE705232-1 Secale cereale; ; Stowaway MITE, complete element | 81 |
| DTT_Scer_Athos_BE705442-1 Secale cereale; ; Stowaway MITE, complete element | 81 |
| DTT_Scer_Athos_BQ483026-1 Secale cereale; ; Stowaway MITE, complete element | 81 |
| DTC_Scer_Clifford_A_consensus-3 Secale cereale; ; consensus sequence;; | 12460 |
| DTC_Scer_Clifford_B_consensus-3 Secale cereale; ; consensus sequence;; | 12490 |
| DTC_Scer_Clifford_C_consensus-3 Secale cereale; ; consensus sequence;; | 12489 |
| DTC_Scer_Clifford_D_consensus-3 Secale cereale; ; consensus sequence;; | 12458 |
| DTC_Scer_Clifford_A_consensus-3 Secale cereale; ; consensus sequence;; | 3351 |
| DTC_Scer_Clifford_A_consensus-3 Secale cereale; ; consensus sequence;; | 3069 |
| DTC_Scer_Clifford_B_consensus-3 Secale cereale; ; consensus sequence;; | 3351 |
| DTC_Scer_Clifford_B_consensus-3 Secale cereale; ; consensus sequence;; | 2883 |
| DTC_Scer_Clifford_C_consensus-3 Secale cereale; ; consensus sequence;; | 3351 |
| DTC_Scer_Clifford_C_consensus-3 Secale cereale; ; consensus sequence;; | 2898 |
| DTC_Scer_Clifford_D_consensus-3 Secale cereale; ; consensus sequence;; | 3351 |
| DTC_Scer_Clifford_D_consensus-3 Secale cereale; ; consensus sequence;; | 2790 |
| DTC_Scer_Conan_A1_consensus-3 Secale cereale; ; consensus sequence;; | 3399 |
| DTC_Scer_Conan_A2_consensus-3 Secale cereale; ; consensus sequence;; | 918 |
| DTC_Scer_Conan_A2A_consensus-3 Secale cereale; ; consensus sequence;; | 1014 |
| DTC_Scer_Conan_A3_consensus-3 Secale cereale; ; consensus sequence;; | 3504 |
| DTC_Scer_Conan_A3_consensus-3 Secale cereale; ; consensus sequence;; | 1038 |
| RLC_Scer_Angela_AA1_consensus-3 Secale cereale; ; consensus sequence;; | 3984 |
| RLC_Scer_Angela_AA2_consensus-3 Secale cereale; ; consensus sequence;; | 3987 |
| RLC_Scer_Angela_AA3_consensus-3 Secale cereale; ; consensus sequence;; | 3984 |
| RLC_Scer_Angela_AA4_consensus-3 Secale cereale; ; consensus sequence;; | 3987 |
| RLC_Scer_Angela_BA1_consensus-3 Secale cereale; ; consensus sequence;; | 3981 |
| RLC_Scer_Angela_BA2_consensus-3 Secale cereale; ; consensus sequence;; | 4029 |
| RLC_Scer_Angela_BA3_consensus-3 Secale cereale; ; consensus sequence;; | 4029 |
| RLC_Scer_Angela_DA1_consensus-3 Secale cereale; ; consensus sequence;; | 3990 |
| RLC_Scer_Angela_DA2_consensus-3 Secale cereale; ; consensus sequence;; | 3990 |
| RLC_Scer_Angela_DA3_consensus-3 Secale cereale; ; consensus sequence;; | 3987 |
| RLC_Scer_Angela_DA4_consensus-3 Secale cereale; ; consensus sequence;; | 3987 |
| RLC_Scer_Angela_EN1_consensus-3 Secale cereale; ; consensus sequence;; | 8581 |
| RLC_Scer_Angela_EN3_consensus-3 Secale cereale; ; consensus sequence;; | 8657 |
| RLC_Scer_Angela_AA1_consensus-3 Secale cereale; ; consensus sequence;; | 8829 |
| RLC_Scer_Angela_BA1_consensus-3 Secale cereale; ; consensus sequence;; | 8722 |
| RLC_Scer_Angela_DA1_consensus-3 Secale cereale; ; consensus sequence;; | 8756 |
| RLC_Scer_Angela_BN1_consensus-3 Secale cereale; ; consensus sequence;; | 8574 |
| RLC_Scer_Angela_FN1_consensus-3 Secale cereale; ; consensus sequence;; | 8708 |
| RLC_Scer_Angela_AA2_consensus-3 Secale cereale; ; consensus sequence;; | 8829 |
| RLC_Scer_Angela_AA3_consensus-3 Secale cereale; ; consensus sequence;; | 8810 |
| RLC_Scer_Angela_AA4_consensus-3 Secale cereale; ; consensus sequence;; | 8821 |
| RLC_Scer_Angela_BA2_consensus-3 Secale cereale; ; consensus sequence;; | 8719 |
| RLC_Scer_Angela_BA3_consensus-3 Secale cereale; ; consensus sequence;; | 8727 |
| RLC_Scer_Angela_BN2_consensus-3 Secale cereale; ; consensus sequence;; | 8571 |
| RLC_Scer_Angela_BN3_consensus-3 Secale cereale; ; consensus sequence;; | 8594 |
| RLC_Scer_Angela_DA2_consensus-3 Secale cereale; ; consensus sequence;; | 8755 |
| RLC_Scer_Angela_DA3_consensus-3 Secale cereale; ; consensus sequence;; | 8735 |
| RLC_Scer_Angela_DA4_consensus-3 Secale cereale; ; consensus sequence;; | 8725 |
| RLC_Scer_Angela_EN2_consensus-3 Secale cereale; ; consensus sequence;; | 8571 |
| RLC_Scer_Angela_EN4_consensus-3 Secale cereale; ; consensus sequence;; | 8666 |
| RLG_Scer_WHAM_AA1_consensus-3 Secale cereale; ; consensus sequence;; | 9481 |
| RLG_Scer_WHAM_AA3_consensus-3 Secale cereale; ; consensus sequence;; | 9503 |
| RLG_Scer_WHAM_BA1_consensus-3 Secale cereale; ; consensus sequence;; | 9543 |
| RLG_Scer_WHAM_BA2_consensus-3 Secale cereale; ; consensus sequence;; | 9567 |
| RLG_Scer_WHAM_CA2_consensus-3 Secale cereale; ; consensus sequence;; | 9622 |
| RLG_Scer_WHAM_CA1_consensus-3 Secale cereale; ; consensus sequence;; | 9558 |
| RLG_Scer_WHAM_AA2_consensus-3 Secale cereale; ; consensus sequence;; | 9494 |
| RLG_Scer_WHAM_AA4_consensus-3 Secale cereale; ; consensus sequence;; | 9419 |
| RLG_Scer_WHAM_AA5_consensus-3 Secale cereale; ; consensus sequence;; | 9439 |
| RLG_Scer_WHAM_AA6_consensus-3 Secale cereale; ; consensus sequence;; | 9439 |
| RLG_Scer_WHAM_BA3_consensus-3 Secale cereale; ; consensus sequence;; | 9550 |
| RLG_Scer_WHAM_BA6_consensus-3 Secale cereale; ; consensus sequence;; | 9540 |
| RLG_Scer_WHAM_AA1_consensus-3 Secale cereale; ; coding sequence;; | 2718 |
| RLG_Scer_WHAM_AA1_consensus-3 Secale cereale; ; coding sequence 2;; | 1083 |
| RLG_Scer_WHAM_AA2_consensus-3 Secale cereale; ; coding sequence;; | 2727 |
| RLG_Scer_WHAM_AA2_consensus-3 Secale cereale; ; coding sequence 2;; | 1083 |
| RLG_Scer_WHAM_AA3_consensus-3 Secale cereale; ; coding sequence;; | 2727 |
| RLG_Scer_WHAM_AA3_consensus-3 Secale cereale; ; coding sequence 2;; | 1083 |
| RLG_Scer_WHAM_AA4_consensus-3 Secale cereale; ; coding sequence;; | 2718 |
| RLG_Scer_WHAM_AA4_consensus-3 Secale cereale; ; coding sequence 2;; | 1026 |
| RLG_Scer_WHAM_AA5_consensus-3 Secale cereale; ; coding sequence;; | 2727 |
| RLG_Scer_WHAM_AA5_consensus-3 Secale cereale; ; coding sequence 2;; | 1026 |
| RLG_Scer_WHAM_AA6_consensus-3 Secale cereale; ; coding sequence;; | 2727 |
| RLG_Scer_WHAM_AA6_consensus-3 Secale cereale; ; coding sequence 2;; | 1026 |
| RLG_Scer_WHAM_BA1_consensus-3 Secale cereale; ; coding sequence;; | 2781 |
| RLG_Scer_WHAM_BA1_consensus-3 Secale cereale; ; coding sequence 2;; | 1035 |
| RLG_Scer_WHAM_BA2_consensus-3 Secale cereale; ; coding sequence;; | 2784 |
| RLG_Scer_WHAM_BA2_consensus-3 Secale cereale; ; coding sequence 2;; | 1017 |
| RLG_Scer_WHAM_BA3_consensus-3 Secale cereale; ; coding sequence;; | 2013 |
| RLG_Scer_WHAM_BA3_consensus-3 Secale cereale; ; coding sequence 2;; | 1014 |
| RLG_Scer_WHAM_BA6_consensus-3 Secale cereale; ; coding sequence;; | 2781 |
| RLG_Scer_WHAM_BA6_consensus-3 Secale cereale; ; coding sequence 2;; | 1008 |
| RLG_Scer_WHAM_CA1_consensus-3 Secale cereale; ; coding sequence;; | 2766 |
| RLG_Scer_WHAM_CA1_consensus-3 Secale cereale; ; coding sequence 2;; | 792 |
| RLG_Scer_WHAM_CA2_consensus-3 Secale cereale; ; coding sequence;; | 2625 |
| RLG_Scer_WHAM_CA2_consensus-3 Secale cereale; ; coding sequence 2;; | 1083 |
| RLG_Scer_Cereba_A_consensus-3 Secale cereale; ; coding sequence;; | 5022 |
| RLG_Scer_Cereba_B_consensus-3 Secale cereale; ; coding sequence;; | 5109 |
| RLG_Scer_Cereba_C_consensus-3 Secale cereale; ; coding sequence;; | 4861 |
| RLG_Scer_Cereba_A_consensus-3 Secale cereale; ; consensus sequence;; | 7817 |
| RLG_Scer_Cereba_B_consensus-3 Secale cereale; ; consensus sequence;; | 7817 |
| RLG_Scer_Cereba_C_consensus-3 Secale cereale; ; consensus sequence;; | 7809 |
| RLG_Scer_Sabrina_A1_consensus-3 Secale cereale; ; coding sequence 0;; | 2067 |
| RLG_Scer_Sabrina_A3_consensus-3 Secale cereale; ; coding sequence 3;; | 834 |
| RLG_Scer_Sabrina_A4_consensus-3 Secale cereale; ; coding sequence 4;; | 816 |
| RLG_Scer_Sabrina_C1_consensus-3 Secale cereale; ; coding sequence 0;; | 2082 |
| RLG_Scer_Sabrina_C2_consensus-3 Secale cereale; ; coding sequence 0;; | 2082 |
| RLG_Scer_Sabrina_C5_consensus-3 Secale cereale; ; coding sequence 4;; | 810 |
| RLG_Scer_Sabrina_D1_consensus-3 Secale cereale; ; coding sequence 5;; | 933 |
| RLG_Scer_Sabrina_D2_consensus-3 Secale cereale; ; coding sequence 5;; | 933 |
| RLG_Scer_Sabrina_E1_consensus-3 Secale cereale; ; coding sequence 5;; | 822 |
| RLG_Scer_Sabrina_E2_consensus-3 Secale cereale; ; coding sequence 5;; | 816 |
| RLG_Scer_Sabrina_A1_consensus-3 Secale cereale; ; consensus sequence;; | 8218 |
| RLG_Scer_Sabrina_A2_consensus-3 Secale cereale; ; consensus sequence;; | 6967 |
| RLG_Scer_Sabrina_A3_consensus-3 Secale cereale; ; consensus sequence;; | 6961 |
| RLG_Scer_Sabrina_A4_consensus-3 Secale cereale; ; consensus sequence;; | 6951 |
| RLG_Scer_Sabrina_D1_consensus-3 Secale cereale; ; consensus sequence;; | 7173 |
| RLG_Scer_Sabrina_C1_consensus-3 Secale cereale; ; consensus sequence;; | 8207 |
| RLG_Scer_Sabrina_C2_consensus-3 Secale cereale; ; consensus sequence;; | 8078 |
| RLG_Scer_Sabrina_C3_consensus-3 Secale cereale; ; consensus sequence;; | 6929 |
| RLG_Scer_Sabrina_C4_consensus-3 Secale cereale; ; consensus sequence;; | 6935 |
| RLG_Scer_Sabrina_C5_consensus-3 Secale cereale; ; consensus sequence;; | 6896 |
| RLG_Scer_Sabrina_D2_consensus-3 Secale cereale; ; consensus sequence;; | 7181 |
| RLG_Scer_Sabrina_E1_consensus-3 Secale cereale; ; consensus sequence;; | 7129 |
| RLG_Scer_Sabrina_E2_consensus-3 Secale cereale; ; consensus sequence;; | 7169 |
| DTM_Scer_Ryemu_chr1R-9 Secale cereale; ; complete element; | 5266 |
| DTM_Scer_Remy_consensus-1 Secale cereale; ; coding sequence 2; | 2265 |
| DTM_Scer_Remy_consensus-1 Secale cereale; ; consensus sequence; | 10807 |
| RLG_Scer_Wilma_consensus-3 Secale cereale; ; consensus sequence; | 10149 |
| RLG_Scer_Fatima_A_consensus-3 Secale cereale; ; consensus sequence;; | 10116 |
| RLG_Scer_Fatima_B_consensus-3 Secale cereale; ; consensus sequence;; | 9328 |
| RLG_Scer_Cereba_Sc1_consensus-4 Secale cereale; ; consensus sequence; | 7810 |
| RLG_Scer_Cereba_Sc2_consensus-4 Secale cereale; ; consensus sequence; | 7815 |
| RLG_Scer_Cereba_Sc3_consensus-4 Secale cereale; ; consensus sequence; | 7814 |
| RLG_Scer_Cereba_Sc4_consensus-4 Secale cereale; ; consensus sequence; | 7818 |
| RLG_Scer_Quinta_A2_consensus-1 Secale cereale; ; consensus sequence; | 4377 |
| RLG_Scer_Quinta_B1_consensus-1 Secale cereale; ; consensus sequence; | 4827 |
| RLG_Scer_Quinta_B2_consensus-1 Secale cereale; ; consensus sequence; | 4427 |
| RLG_Scer_Abia_consensus-1 Secale cereale; ; consensus sequence | 8497 |
| RLG_Scer_Abiba_consensus-1 Secale cereale; ; consensus sequence | 14579 |
| RLG_Scer_Abigail_A_consensus-2 Secale cereale; ; consensus sequence; | 8360 |
| RLG_Scer_Abigail_B_consensus-2 Secale cereale; ; consensus sequence; | 7974 |
| RLG_Scer_Abigail_C_consensus-2 Secale cereale; ; consensus sequence; | 7438 |
| RLG_Scer_Abigail_D_consensus-2 Secale cereale; ; consensus sequence; | 7067 |