uzh logo trep-db vers. 20 Aug 2019

TREP, the TRansposable Elements Platform

Fasta file for elements in total_TREP

Sequences: 277
Total size: 650939 bp

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SequenceSize
XXX_Osat_XAB_AC084282-1 Oryza sativa; ; complete element220
RLG_Osat_OsTaz_consensus-1 Oryza sativa; ; consensus sequence6361
DHH_Osat_Paddington_consensus-1 Oryza sativa; ; consensus sequence17472
DTH_Osat_Pong_BK000586-1 Oryza sativa; ; complete element5166
DTC_Osat_Baldur_consensus-1 Oryza sativa; ; consensus sequence8955
DTC_Osat_Benito_consensus-1 Oryza sativa; ; consensus sequence4256
DTC_Osat_Calvin_consensus-1 Oryza sativa; ; consensus sequence10759
DTC_Osat_Carson_consensus-1 Oryza sativa; ; consensus sequence1282
DTC_Osat_Dorian_consensus-1 Oryza sativa; ; consensus sequence9874
DTC_Osat_Eric_consensus-1 Oryza sativa; ; consensus sequence10606
DTC_Osat_Grover_consensus-1 Oryza sativa; ; consensus sequence11420
DTC_Osat_Isidor_consensus-1 Oryza sativa; ; consensus sequence11265
DTC_Osat_Radon_consensus-1 Oryza sativa; ; consensus sequence11607
DTC_Osat_Rufus_consensus-1 Oryza sativa; ; consensus sequence11216
DTC_Osat_Sandro_consensus-1 Oryza sativa; ; consensus sequence11931
DTC_Osat_Seamus_consensus-1 Oryza sativa; ; consensus sequence8871
DTC_Osat_Sherman_consensus-1 Oryza sativa; ; consensus sequence13123
DTC_Osat_Storm_consensus-1 Oryza sativa; ; consensus sequence12603
DTH_Osat_OsKong_consensus-1 Oryza sativa; ; consensus sequence2589
RLG_Osat_hopi_LTRcons-1 Oryza sativa; ; LTR consensus sequence, 1090
RLG_Osat_rire7_LTRcons-1 Oryza sativa; ; LTR consensus sequence, 858
DTT_Ogla_SA_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus241
DTT_Ogla_SAA_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus244
DTT_Ogla_SAB_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus108
DTT_Ogla_SAC_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus149
DTT_Ogla_SB_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus194
DTT_Ogla_SC_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus296
DTT_Ogla_SD_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus264
DTT_Ogla_SE_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus263
DTT_Ogla_SG_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus239
DTT_Ogla_SH_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus239
DTT_Ogla_SI_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus240
DTT_Ogla_SJ_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus242
DTT_Ogla_SK_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus265
DTT_Ogla_SM_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus261
DTT_Ogla_SN_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus263
DTT_Ogla_SQ_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus317
DTT_Ogla_SR_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus103
DTT_Ogla_SS_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus261
DTT_Ogla_ST_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus148
DTT_Ogla_SU_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus255
DTT_Ogla_SV_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus110
DTT_Ogla_SW_consensus-1 Oryza glaberrima; ; Stowaway MITE, consensus232
DTA_Osat_HA_RND-1 Oryza sativa; ; complete element1027
DTA_Osat_HA_RND-3 Oryza sativa; ; complete element1018
DTC_Ogla_Storm_NA_consensus-1 Oryza glaberrima; ; consensus sequence796
DTC_Osat_CA_consensus-1 Oryza sativa; ; consensus sequence653
DTH_Ogla_Baba_c3p9479789-1 Oryza glaberrima; ; complete element3986
DTH_Ogla_Blip_A_rnd-1 Oryza glaberrima; ; complete element5319
DTM_Ogla_HA_consensus-1 Oryza glaberrima; ; consensus sequence476
DTH_Ogla_TA_consensus-1 Oryza glaberrima; ; consensus sequence286
DTH_Ogla_TAA_consensus-1 Oryza glaberrima; ; consensus sequence279
DTH_Ogla_TAB_consensus-1 Oryza glaberrima; ; consensus sequence272
DTH_Ogla_TB_consensus-1 Oryza glaberrima; ; consensus sequence138
DTH_Ogla_TC_consensus-1 Oryza glaberrima; ; consensus sequence356
DTH_Ogla_TD_consensus-1 Oryza glaberrima; ; consensus sequence139
DTH_Ogla_TE_consensus-1 Oryza glaberrima; ; consensus sequence310
DTH_Ogla_TF_consensus-1 Oryza glaberrima; ; consensus sequence345
DTH_Ogla_TG_consensus-1 Oryza glaberrima; ; consensus sequence219
DTH_Ogla_TI_c3p35273406-1 Oryza glaberrima; ; complete element106
DTH_Ogla_TO_consensus-1 Oryza glaberrima; ; consensus sequence244
DTH_Ogla_TR_consensus-1 Oryza glaberrima; ; consensus sequence263
DTH_Ogla_TS_consensus-1 Oryza glaberrima; ; consensus sequence353
DTH_Ogla_TT_c3p22775290-1 Oryza glaberrima; ; complete element844
DTH_Ogla_TU_c3p34843439-1 Oryza glaberrima; ; complete element530
DTH_Ogla_TV_consensus-1 Oryza glaberrima; ; consensus sequence316
DTH_Ogla_TW_consensus-1 Oryza glaberrima; ; consensus sequence306
DTM_Ogla_TX_consensus-1 Oryza glaberrima; ; consensus sequence376
DTH_Ogla_TY_consensus-1 Oryza glaberrima; ; consensus sequence850
DTH_Ogla_TZ_c3p2332487-1 Oryza glaberrima; ; complete element552
DTM_Osat_HA_consensus-1 Oryza sativa; ; consensus sequence486
DTH_Osat_TAA_consensus-1 Oryza sativa; ; consensus sequence279
DTH_Osat_TAB_consensus-1 Oryza sativa; ; consensus sequence272
DTH_Osat_TO_consensus-1 Oryza sativa; ; consensus sequence244
DTH_Osat_TS_consensus-1 Oryza sativa; ; consensus sequence347
DTH_Osat_TU_Os10-1 Oryza sativa; ; complete element551
DTH_Osat_TU_Os11-1 Oryza sativa; ; complete element491
DTH_Osat_TV_consensus-1 Oryza sativa; ; consensus sequence304
DTH_Osat_TW_consensus-1 Oryza sativa; ; consensus sequence306
DTM_Osat_TX_consensus-1 Oryza sativa; ; consensus sequence376
DTH_Osat_TY_consensus-1 Oryza sativa; ; consensus sequence858
DTH_Osat_TZ_consensus-1 Oryza sativa; ; consensus sequence557
DTM_Ogla_MA_consensus-1 Oryza glaberrima; ; consensus sequence382
DTM_Ogla_MB_consensus-1 Oryza glaberrima; ; consensus sequence685
DTM_Ogla_MC_consensus-1 Oryza glaberrima; ; consensus sequence745
DTM_Ogla_MD_consensus-1 Oryza glaberrima; ; consensus sequence392
DTM_Ogla_ME_c3p3617225-1 Oryza glaberrima; ; complete element395
DTM_Ogla_MF_c3p8330373-1 Oryza glaberrima; ; complete element683
DTM_Ogla_MG_c3p34592809-1 Oryza glaberrima; ; complete element3841
DTM_Ogla_MH_c3p10435072-1 Oryza glaberrima; ; complete element556
DTA_Ogla_MI_consensus-1 Oryza glaberrima; ; consensus sequence188
DTM_Ogla_MJ_c3p5531207-1 Oryza glaberrima; ; complete element174
DTM_Ogla_MK_NA_consensus-2 Oryza glaberrima; ; consensus sequence685
DTM_Osat_MF_consensus-1 Oryza sativa; ; consensus sequence712
DTM_Osat_MH_consensus-1 Oryza sativa; ; consensus sequence556
DTA_Osat_MI_consensus-1 Oryza sativa; ; consensus sequence191
DTM_Osat_MJ_consensus-1 Oryza sativa; ; consensus sequence170
DTM_Osat_MK_NA_consensus-1 Oryza sativa; ; consensus sequence685
DTT_Ogla_SX_consensus-1 Oryza glaberrima; ; consensus sequence216
DTT_Osat_SB_consensus-1 Oryza sativa; ; consensus sequence154
DTT_Osat_SC_consensus-1 Oryza sativa; ; consensus sequence296
DTT_Osat_SD_consensus-1 Oryza sativa; ; consensus sequence264
DTT_Osat_SE_consensus-1 Oryza sativa; ; consensus sequence263
DTT_Osat_SG_consensus-1 Oryza sativa; ; consensus sequence239
DTT_Osat_SH_consensus-1 Oryza sativa; ; consensus sequence240
DTT_Osat_SJ_consensus-1 Oryza sativa; ; consensus sequence245
DTT_Osat_SK_consensus-1 Oryza sativa; ; consensus sequence266
DTT_Osat_SM_consensus-1 Oryza sativa; ; consensus sequence262
DTT_Osat_SN_consensus-1 Oryza sativa; ; consensus sequence263
DTT_Osat_SQ_consensus-1 Oryza sativa; ; consensus sequence317
DTT_Osat_SS_consensus-1 Oryza sativa; ; consensus sequence261
DTT_Osat_ST_consensus-1 Oryza sativa; ; consensus sequence149
DTT_Osat_SU_consensus-1 Oryza sativa; ; consensus sequence255
DTT_Osat_SV_consensus-1 Oryza sativa; ; consensus sequence116
DTT_Osat_SW_consensus-1 Oryza sativa; ; consensus sequence232
DTT_Osat_SX_consensus-1 Oryza sativa; ; consensus sequence216
RLC_Ogla_Owis_consensus-1 Oryza glaberrima; ; consensus sequence4663
RLG_Osat_Cara_consensus-1 Oryza sativa; ; consensus sequence11431
RLX_Ogla_Dahlia_consensus-1 Oryza glaberrima; ; consensus sequence1594
RLX_Ogla_RAA_consensus-1 Oryza glaberrima; ; consensus sequence250
RLX_Osat_Carla_consensus-1 Oryza sativa; ; consensus sequence3916
RLX_Osat_RAA_consensus-1 Oryza sativa; ; consensus sequence725
RLX_Osat_RAA_consensus-1 Oryza sativa; ; consensus sequence249
RSX_Ogla_Cleo_consensus-1 Oryza glaberrima; ; consensus sequence206
RSX_Osat_Cleo_consensus-1 Oryza sativa; ; consensus sequence210
DHH_Osat_Mothra_NA_consensus-1 Oryza sativa; ; consensus sequence;2276
DHH_Osat_Mothra_RND-2 Oryza sativa; ; complete element2243
DHH_Osat_Mothra_RND-4 Oryza sativa; ; complete element2595
XXX_Osat_XAA_consensus-1 Oryza sativa; ; consensus sequence640
DTA_Ogla_HA_c9p20275907-1 Oryza glaberrima; ; complete element589
DTA_Osat_HB_NA_RND-1 Oryza sativa; ; complete element672
DTA_Osat_HC_NA_RND-1 Oryza sativa; ; complete element943
DTA_Osat_HD_NA_RND-1 Oryza sativa; ; complete element4347
DTA_Osat_HE_NA_RND-1 Oryza sativa; ; complete element506
DTA_Osat_HG_NA_RND-1 Oryza sativa; ; complete element471
DTA_Osat_HI_NA_RND-1 Oryza sativa; ; complete element293
DTA_Osat_HJ_NA_RND-1 Oryza sativa; ; complete element1071
DTA_Osat_HK_NA_RND-1 Oryza sativa; ; complete element1441
DTC_Osat_Alix_RND-1 Oryza sativa; ; complete element5016
DTC_Osat_Benito_NA_RND-1 Oryza sativa; ; complete element919
DTC_Osat_Benito_NA_RND-2 Oryza sativa; ; complete element905
DTC_Osat_Calvin_NA_RND-1 Oryza sativa; ; complete element1124
DTC_Osat_Calvin_NA_RND-9 Oryza sativa; ; complete element1221
DTC_Osat_Grover_NA_RND-2 Oryza sativa; ; complete element1688
DTC_Osat_Janus_consensus-1 Oryza sativa; ; consensus sequence12798
DTH_Ogla_TAS_RND-1 Oryza glaberrima; ; complete element817
DTH_Ogla_TAU_RND-1 Oryza glaberrima; ; complete element283
DTH_Osat_TAC_RND-1 Oryza sativa; ; complete element348
DTH_Osat_TAD_RND-1 Oryza sativa; ; complete element140
DTH_Osat_TAE_RND-1 Oryza sativa; ; complete element241
DTH_Osat_TAF_RND-1 Oryza sativa; ; complete element124
DTH_Osat_TAH_RND-1 Oryza sativa; ; complete element6403
DTH_Osat_TAI_RND-1 Oryza sativa; ; complete element332
DTH_Osat_TAJ_RND-1 Oryza sativa; ; complete element251
DTH_Osat_TAK_RND-1 Oryza sativa; ; complete element201
DTH_Osat_TAL_RND-1 Oryza sativa; ; complete element180
DTH_Osat_TAO_RND-1 Oryza sativa; ; complete element284
DTH_Osat_TAP_RND-1 Oryza sativa; ; complete element312
DTH_Osat_TC_RND-1 Oryza sativa; ; complete element364
NULL_Osat_NULL_consensus-1 Oryza sativa; ; complete element6663
DTM_Osat_MAC_RND-1 Oryza sativa; ; complete element1703
DTM_Osat_MA_RND-1 Oryza sativa; ; complete element176
DTM_Osat_MAA_RND-1 Oryza sativa; ; complete element486
DTM_Osat_MAB_RND-1 Oryza sativa; ; complete element378
DTM_Osat_MAC_RND-2 Oryza sativa; ; complete element497
DTM_Osat_MAD_RND-1 Oryza sativa; ; complete element776
DTM_Osat_MAE_RND-1 Oryza sativa; ; complete element570
DTM_Osat_MAF_RND-1 Oryza sativa; ; complete element2849
DTA_Osat_MAG_RND-1 Oryza sativa; ; complete element2016
DTM_Osat_MK_NA_RND-1 Oryza sativa; ; complete element2000
DTM_Osat_MK_NA_RND-2 Oryza sativa; ; complete element3583
DTM_Osat_MK_RND-1 Oryza sativa; ; complete element9062
DTM_Osat_MK_RND-2 Oryza sativa; ; complete element5607
DTM_Osat_MK_RND-3 Oryza sativa; ; complete element6720
DTM_Osat_MK_RND-4 Oryza sativa; ; complete element6283
DTM_Osat_MN_RND-1 Oryza sativa; ; complete element381
DTM_Osat_MP_RND-1 Oryza sativa; ; complete element391
DTM_Osat_MQ_RND-1 Oryza sativa; ; complete element613
DTM_Osat_MR_RND-1 Oryza sativa; ; complete element1494
DTM_Osat_MS_RND-1 Oryza sativa; ; complete element3942
DTM_Osat_MU_RND-1 Oryza sativa; ; complete element376
DTM_Osat_MX_RND-1 Oryza sativa; ; complete element573
DTM_Osat_MY_RND-1 Oryza sativa; ; complete element870
DTM_Osat_MZ_RND-1 Oryza sativa; ; complete element1128
DTT_Osat_SAD_RND-1 Oryza sativa; ; complete element286
DTT_Osat_SAF_RND-1 Oryza sativa; ; complete element3196
DTM_Osat_XB_RND-1 Oryza sativa; ; complete element157
RLG_Osat_Cora_RND-1 Oryza sativa; ; complete element4380
RLG_Osat_GA_RND-1 Oryza sativa; ; fragment5663
RLG_Osat_hopi_RND-1 Oryza sativa; ; complete element5417
RLG_Osat_RAG_RND-1 Oryza sativa; ; complete element4380
RLX_Osat_RAB_RND-1 Oryza sativa; ; complete element, solo-LTR3987
RLX_Osat_RAC_RND-1 Oryza sativa; ; complete element, solo-LTR2853
RLX_Osat_RAC_RND-2 Oryza sativa; ; complete element, solo-LTR3710
RLX_Osat_RAI_RND-1 Oryza sativa; ; complete element, solo-LTR3519
RLX_Osat_RAJ_RND-1 Oryza sativa; ; complete element, solo-LTR3565
RLX_Osat_RAL_RND-1 Oryza sativa; ; complete element, solo-LTR835
RLX_Osat_RAM_RND-1 Oryza sativa; ; complete element7115
RLX_Osat_RAN_RND-1 Oryza sativa; ; complete element, solo-LTR3134
RLX_Osat_RAO_RND-1 Oryza sativa; ; complete element2115
RSX_Osat_Iantha_consensus-1 Oryza sativa; ; consensus sequence282
DTH_Ogla_XAB_RND-1 Oryza glaberrima; ; complete element245
DTA_Ogla_HL_RND-1 Oryza glaberrima; ; complete element803
DTA_Osat_Coraline_RND-1 Oryza sativa; ; complete element3571
DTH_Osat_TAD_RND-2 Oryza sativa; ; complete element140
DTM_Osat_MT_RND-1 Oryza sativa; ; complete element663
DHH_Osat_MA_RND-1 Oryza sativa; ; fragment7027
DHH_Osat_XHA_RND-1 Oryza sativa; ; fragment3523
NULL_Osat_NULL_consensus-1 Oryza sativa; ; fragment526
NULL_Osat_NULL_consensus-1 Oryza sativa; ; complete element490
DTA_Osat_Os01g56900_consensus-1 Oryza sativa; ; consensus sequence989
NULL_Osat_NULL_consensus-1 Oryza sativa; ; consensus sequence287
DTC_Ogla_Ted_Os02g44810-1 Oryza glaberrima; ; complete element8679
DTC_Ogla_Benny_Os1-1 Oryza glaberrima; ; complete element1506
DTC_Osat_Calvin_NA_RND-12 Oryza sativa; ; complete element1387
DTC_Osat_HUckabee_Os8-1 Oryza sativa; ; complete element8740
DTH_Ogla_TB_RND-1 Oryza glaberrima; ; complete element343
DTH_Osat_TAE2_consensus-1 Oryza sativa; ; consensus sequence236
DTH_Osat_TAU_Os1-1 Oryza sativa; ; complete element4250
DTH_Osat_TAV_consensus-1 Oryza sativa; ; consensus sequence236
DTH_Osat_TBA_consensus-1 Oryza sativa; ; consensus sequence159
DTH_Osat_TBB_consensus-1 Oryza sativa; ; consensus sequence272
DTH_Osat_TBC_consensus-1 Oryza sativa; ; consensus sequence65
DTH_Osat_TBD_Os1-1 Oryza sativa; ; complete element1109
DTH_Osat_TBE_consensus-1 Oryza sativa; ; consensus sequence327
DTH_Osat_TBF_Os1-1 Oryza sativa; ; complete element4203
DTH_Osat_TBG_consensus-1 Oryza sativa; ; consensus sequence132
DTH_Osat_TBH_consensus-1 Oryza sativa; ; consensus sequence159
DTM_Ogla_MAG_Os1-1 Oryza glaberrima; ; complete element4732
DTM_Ogla_MAH_Os1-1 Oryza glaberrima; ; complete element4422
DTM_Ogla_MAH_Os1-2 Oryza glaberrima; ; complete element5111
DTM_Ogla_MAI_Os4-1 Oryza glaberrima; ; complete element1874
DTM_Ogla_MAI_Os4-2 Oryza glaberrima; ; complete element1595
NULL_Ogla_NULL_consensus-1 Oryza glaberrima; ; complete element6028
NULL_Ogla_NULL_consensus-1 Oryza glaberrima; ; complete element1203
NULL_Ogla_NULL_consensus-1 Oryza glaberrima; ; complete element1735
DTM_Osat_Carl_A_consensus-1 Oryza sativa; ; consensus sequence2251
DTM_Osat_Carl_B_consensus-1 Oryza sativa; ; consensus sequence709
DTM_Osat_Carl_C_RND-1025 Oryza sativa; ; complete element3041
DTM_Osat_Carl_D_RND-1022 Oryza sativa; ; complete element1650
DTM_Osat_Carl_D_RND-1029 Oryza sativa; ; complete element1652
NULL_Osat_NULL_consensus-1 Oryza sativa; ; complete element807
DTM_Osat_Carl_E_RND-1012 Oryza sativa; ; complete element805
DTM_Osat_Carl_F_RND-1009 Oryza sativa; ; complete element1476
DTM_Osat_Carl_G_RND-1013 Oryza sativa; ; complete element911
DTM_Osat_Carl_H_RND-1021 Oryza sativa; ; complete element1495
DTM_Osat_Carl_I_RND-1024 Oryza sativa; ; complete element609
DTM_Osat_Carl_K_RND-1026 Oryza sativa; ; complete element922
DTM_Osat_MAL_consensus-1 Oryza sativa; ; consensus sequence13766
NULL_Osat_NULL_consensus-1 Oryza sativa; ; complete element6955
DTM_Osat_Os01g45110_consensus-1 Oryza sativa; ; consensus sequence396
DTX_Osat_AA_consensus-1 Oryza sativa; ; consensus sequence337
NULL_Osat_NULL_consensus-1 Oryza sativa; ; complete element1347
RIL_Ogla_Cholla_RND-1 Oryza glaberrima; ; fragment2778
RIL_Ogla_Creosote_RND-1 Oryza glaberrima; ; fragment3700
RIL_Ogla_Ocotillo_RND-1 Oryza glaberrima; ; fragment2533
RIL_Ogla_Yucca_RND-1 Oryza glaberrima; ; fragment2190
RIX_Osat_Rare1_Og11-1 Oryza sativa; ; complete element6399
RLC_Ogla_Sandy_RND-1 Oryza glaberrima; ; complete element12840
RLC_Osat_Anina_XXX_Os9-1 Oryza sativa; ; complete element7655
RLC_Osat_Simone_consensus-1 Oryza sativa; ; complete element5208
RLC_Osat_Rare2_RND-1 Oryza sativa; ; complete element11827
RLC_Osat_TAR2_Os7-5 Oryza sativa; ; complete element6462
RLG_Osat_Saguaro_RND-1 Oryza sativa; ; complete element13663
RLG_Osat_GA_Og3-1 Oryza sativa; ; complete element13687
RLG_Osat_RAF_Os2-1 Oryza sativa; ; complete element12049
RLX_Ogla_RAK_consensus-1 Oryza glaberrima; ; consensus sequence3154
RLX_Osat_RAC2_consensus-1 Oryza sativa; ; consensus sequence2987
XXX_Ogla_XAC_consensus-1 Oryza glaberrima; ; consensus sequence760
XXX_Ogla_XAD_consensus-1 Oryza glaberrima; ; consensus sequence681
DTA_Ogla_MI_consensus-2 Oryza glaberrima; ; consensus sequence186
DTA_Osat_HD_NA_RND-2 Oryza sativa; ; consensus sequence600
RSX_Osat_pSINE1_consensus-1 Oryza sativa; ; consensus sequence122
RLC_Osat_TAR10_consensus-1 Oryza sativa; ; consensus sequence6440
RLC_Osat_TAR2_consensus-1 Oryza sativa; ; consensus sequence6481
RLC_Osat_TAR2_consensus-1 Oryza sativa; ; consensus sequenceNULL
RLC_Osat_Houba_consensus-1 Oryza sativa; ; consensus sequence6446