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TREP, the TRansposable Elements Platform

Fasta file for Cladonia elements in total_TREP

Sequences: 229
Total size: 707252 bp

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SequenceSize
DTX_Craf_bac30G_RND-1 Cladonia rangiferina; ; complete element2592
DTX_Craf_bac30G_RND-2 Cladonia rangiferina; ; complete element2593
DTX_Craf_bac30G_RND-3 Cladonia rangiferina; ; complete element2592
DTX_Craf_bac30G_RND-4 Cladonia rangiferina; ; complete element2593
DTX_Craf_bac30G_RND-5 Cladonia rangiferina; ; complete element2592
DTX_Craf_bac30G_RND-6 Cladonia rangiferina; ; complete element2591
DTX_Craf_bac30A_c1633-19 Cladonia rangiferina; ; complete element2455
DTX_Craf_bac30A_c382-28 Cladonia rangiferina; ; complete element2449
DTX_Craf_bac30B_c382-29 Cladonia rangiferina; ; complete element2596
DTX_Craf_bac30B_c382-31 Cladonia rangiferina; ; complete element2574
DTX_Craf_bac30C_c382-34 Cladonia rangiferina; ; complete element2454
DTX_Craf_bac30D_c382-7 Cladonia rangiferina; ; complete element2472
DTX_Craf_bac30F_RND-2 Cladonia rangiferina; ; complete element2589
DTX_Craf_bac30F_RND-3 Cladonia rangiferina; ; complete element2589
DTX_Craf_bac30G_consensus-1 Cladonia rangiferina; ; consensus sequence2592
DTX_Craf_bac31A_consensus-1 Cladonia rangiferina; ; consensus sequence862
DTX_Craf_bac31C_RND-1001 Cladonia rangiferina; ; NULL856
DTX_Craf_bac31A_consensus-1 Cladonia rangiferina; ; consensus sequence862
DTX_Craf_bac31B_consensus-1 Cladonia rangiferina; ; consensus sequence854
DTX_Craf_bac31A_consensus-1 Cladonia rangiferina; ; consensus sequence855
DTX_Craf_bac31B_consensus-1 Cladonia rangiferina; ; consensus sequence855
DTX_Craf_bac31C_c2585-1 Cladonia rangiferina; ; complete element856
DTX_Craf_bac31F_consensus-1 Cladonia rangiferina; ; consensus sequence1167
DTX_Craf_bac32A_consensus-1 Cladonia rangiferina; ; consensus sequence2615
DTX_Craf_bac32C_consensus-1 Cladonia rangiferina; ; consensus sequence2561
DTX_Craf_bac32D_consensus-1 Cladonia rangiferina; ; consensus sequence2645
DTX_Craf_bac32F_consensus-1 Cladonia rangiferina; ; consensus sequence1367
DTX_Craf_bac32H_consensus-1 Cladonia rangiferina; ; consensus sequence2103
DTX_Craf_bac32I_consensus-1 Cladonia rangiferina; ; consensus sequence1491
DTX_Craf_bac32J_consensus-1 Cladonia rangiferina; ; consensus sequence1374
DTX_Craf_bac32K_consensus-1 Cladonia rangiferina; ; consensus sequence1470
DTX_Craf_bac32L_consensus-1 Cladonia rangiferina; ; consensus sequence2231
DTX_Craf_bac32M_consensus-1 Cladonia rangiferina; ; consensus sequence886
DTX_Craf_bac32N_consensus-1 Cladonia rangiferina; ; consensus sequence920
DTX_Craf_bac32O_consensus-1 Cladonia rangiferina; ; consensus sequence1280
DTX_Craf_bac32P_c13-1019 Cladonia rangiferina; ; complete element961
DTX_Craf_bac34A_c3099-1 Cladonia rangiferina; ; complete element838
DTX_Craf_bac34A_RND-2 Cladonia rangiferina; ; complete element838
DTX_Craf_bac31D_c441-1062 Cladonia rangiferina; ; complete element1065
DTX_Craf_bac31E_c441-1067 Cladonia rangiferina; ; complete element1055
DTX_Craf_SphinA_c1041-1059 Cladonia rangiferina; ; complete element2474
DTX_Craf_SphinB_c1759-1518 Cladonia rangiferina; ; complete element2512
DTX_Craf_SphinB_c3334-2136 Cladonia rangiferina; ; complete element2386
DTX_Craf_bac31A_c1093-1008 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31A_c2033-1003 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31A_c2585-1004 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31A_c2585-1005 Cladonia rangiferina; ; complete element856
DTX_Craf_bac31A_c2777-1009 Cladonia rangiferina; ; complete element856
DTX_Craf_bac31A_c296-1010 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31A_c379-1011 Cladonia rangiferina; ; complete element851
DTX_Craf_bac31A_c441-1001 Cladonia rangiferina; ; complete element851
DTX_Craf_bac31A_c441-1002 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31A_c839-1006 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31A_c839-1007 Cladonia rangiferina; ; complete element853
DTX_Craf_bac31B_c1093-1006 Cladonia rangiferina; ; complete element856
DTX_Craf_bac31B_c1093-1007 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31B_c2033-1003 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31B_c2777-1008 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31B_c296-1001 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31B_c441-1005 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31B_c617-1002 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31B_c839-1004 Cladonia rangiferina; ; complete element855
DTX_Craf_bac31F_c1186-1003 Cladonia rangiferina; ; complete element1167
DTX_Craf_bac31F_c121-1001 Cladonia rangiferina; ; complete element1167
DTX_Craf_bac31F_c1373-1010 Cladonia rangiferina; ; complete element1208
DTX_Craf_bac31F_c2492-1002 Cladonia rangiferina; ; complete element1167
DTX_Craf_bac31F_c2585-1004 Cladonia rangiferina; ; complete element1170
DTX_Craf_bac31F_c2585-1005 Cladonia rangiferina; ; complete element1167
DTX_Craf_bac31F_c367-1008 Cladonia rangiferina; ; complete element1167
DTX_Craf_bac31F_c367-1009 Cladonia rangiferina; ; complete element1168
DTX_Craf_bac31F_c441-1006 Cladonia rangiferina; ; complete element1167
DTX_Craf_bac31F_c839-1007 Cladonia rangiferina; ; complete element1167
RLC_Craf_Clara_consensus-1 Cladonia rangiferina; ; consensus sequence5012
RLC_Craf_Clara_GR013c1030-1 Cladonia rangiferina; ; complete element5014
DTX_Craf_bac35B_RND-1 Cladonia rangiferina; ; fragment825
DTX_Craf_bac35B_RND-2 Cladonia rangiferina; ; fragment830
DTX_Craf_bac35C_RND-1 Cladonia rangiferina; ; complete element803
DTX_Craf_bac35C_RND-2 Cladonia rangiferina; ; complete element801
DTX_Craf_bac35D_RND-1 Cladonia rangiferina; ; complete element2233
DTX_Craf_bac35D_RND-2 Cladonia rangiferina; ; complete element2234
DTX_Craf_bac35A_consensus-1 Cladonia rangiferina; ; consensus sequence936
ORC_Craf_rDNA_c2202-1 Cladonia rangiferina; ; complete rDNA operon5803
ORC_Craf_rDNA_c2714-1 Cladonia rangiferina; ; complete rDNA operon6301
ORC_Craf_rDNA_consensus-1 Cladonia rangiferina; ; complete rDNA operon5069
ORC_Craf_rDNA_KY119381-1 Cladonia rangiferina; ; complete rDNA operon5993
ORC_Craf_rDNAunsp_consensus-1 Cladonia rangiferina; ; complete rDNA operon6797
ORC_Cunc_rDNA_KY119382-1 Cladonia uncialis; ; complete rDNA operon5845
DHH_Craf_HA_c797_consensus-1 Cladonia rangiferina; ; consensus sequence;6112
DHH_Craf_HB_c123-1 Cladonia rangiferina; ; complete element6981
DHH_Craf_HB_consensus-1 Cladonia rangiferina; ; consensus sequence6975
DTM_Craf_Hades_consensus-1 Cladonia rangiferina; ; consensus sequence735
DTT_Craf_Argento_consensus-1 Cladonia rangiferina; ; consensus sequence8215
DTT_Craf_Suspiria_consensus-1 Cladonia rangiferina; ; consensus sequence3707
DTX_Craf_Bac583A_RND-1_consensus-1 Cladonia rangiferina; ; consensus sequence;1064
DTX_Craf_Bac583A_RND-2_consensus-1 Cladonia rangiferina; ; consensus sequence;1369
DTX_Craf_bacBastet_RND-1 Cladonia rangiferina; ; fragment6263
DTX_Craf_bacBowie_consensus-1 Cladonia rangiferina; ; consensus sequence1835
DTX_Craf_Dionysus_consensus-1 Cladonia rangiferina; ; consensus sequence730
DTX_Craf_Eron_GR013c105-1 Cladonia rangiferina; ; complete element571
DTX_Craf_Fulci_c16-1 Cladonia rangiferina; ; complete element4046
DTX_Craf_Fulci_c702-1 Cladonia rangiferina; ; complete element3882
RIX_Craf_Choriatiki_c316-1 Cladonia rangiferina; ; complete element2493
RIX_Craf_Choriatiki_consensus-1 Cladonia rangiferina; ; consensus sequence5303
RIX_Craf_Kleftiko_consensus-1 Cladonia rangiferina; ; consensus sequence2016
RLG_Craf_GA_consensus-2 Cladonia rangiferina; ; consensus sequence10425
RLG_Craf_GA_consensus-4 Cladonia rangiferina; ; consensus sequence10426
RLG_Craf_Hera_consensus-1 Cladonia rangiferina; ; consensus sequence6118
RLG_Craf_Horus_GR013c2891-1 Cladonia rangiferina; ; complete element6075
RLG_Craf_Kirke_consensus-1 Cladonia rangiferina; ; consensus sequence7440
RLG_Craf_Kirke_consensus-2 Cladonia rangiferina; ; consensus sequence8186
RLG_Craf_Soutzoukakia_consensus-1 Cladonia rangiferina; ; consensus sequence6669
RLG_Craf_Souvlaki_consensus-1 Cladonia rangiferina; ; consensus sequence5806
RLG_Craf_Souvlaki_GR013c349-1 Cladonia rangiferina; ; complete element5814
RLG_Craf_Souvlaki_GR013c748-1 Cladonia rangiferina; ; complete element5814
RLG_Craf_Stifado_consensus-1 Cladonia rangiferina; ; consensus sequence6643
XXX_Craf_bacKarl_consensus-1 Cladonia rangiferina; ; consensus sequence2248
XXX_Craf_bacVielfrass_consensus-1 Cladonia rangiferina; ; consensus sequence781
XXX_Craf_Gyros_consensus-1 Cladonia rangiferina; ; consensus sequence1119
XXX_Craf_Moussaka_consensus-1 Cladonia rangiferina; ; consensus sequence186
XXX_Craf_Moussaka_consensus-2 Cladonia rangiferina; ; consensus sequence324
XXX_Craf_Pastitsio_consensus-1 Cladonia rangiferina; ; consensus sequence166
XXX_Craf_Tzatziki_consensus-1 Cladonia rangiferina; ; consensus sequence451
ITS_Carb_rDNA_ITS12_consensus-1 Cladonia arbuscula; ; consensus sequence;503
ITS_Cbel_rDNA_ITS12_consensus-1 Cladonia bellidiflora; ; consensus sequence;504
ITS_Ccae_rDNA_ITS12_consensus-1 Cladonia caespiticia; ; consensus sequence;506
ITS_Ccar_rDNA_ITS12_consensus-1 Cladonia cariosa; ; consensus sequence;504
ITS_Ccen_rDNA_ITS12_consensus-1 Cladonia cenotea; ; consensus sequence;503
ITS_Cvic_rDNA_ITS12_consensus-1 Cladonia cervicornis; ; consensus sequence;513
ITS_Cchl_rDNA_ITS12_consensus-1 Cladonia chlorophaea; ; consensus sequence;503
ITS_Ccoc_rDNA_ITS12_consensus-1 Cladonia coccifera; ; consensus sequence;505
ITS_Cioc_rDNA_ITS12_consensus-1 Cladonia coniocraea; ; consensus sequence;503
ITS_Cvol_rDNA_ITS12_consensus-1 Cladonia convoluta; ; consensus sequence;508
ITS_Cnut_rDNA_ITS12_consensus-1 Cladonia cornuta; ; consensus sequence;503
ITS_Cspa_rDNA_ITS12_consensus-1 Cladonia crispata; ; consensus sequence;502
ITS_Cfim_rDNA_ITS12_consensus-1 Cladonia fimbriata; ; consensus sequence;500
ITS_Cfol_rDNA_ITS12_consensus-1 Cladonia foliacea; ; consensus sequence;508
ITS_Cfur_rDNA_ITS12_consensus-1 Cladonia furcata; ; consensus sequence;507
ITS_Cgrc_rDNA_ITS12_consensus-1 Cladonia gracilis; ; consensus sequence;503
ITS_Chum_rDNA_ITS12_consensus-1 Cladonia humilis; ; consensus sequence;511
ITS_Clut_rDNA_ITS12_consensus-1 Cladonia luteoalba; ; consensus sequence;505
ITS_Cmac_rDNA_ITS12_consensus-1 Cladonia macilenta; ; consensus sequence;506
ITS_Cmit_rDNA_ITS12_consensus-1 Cladonia mitis; ; consensus sequence;503
ITS_Cple_rDNA_ITS12_consensus-1 Cladonia pleurota; ; consensus sequence;505
ITS_Cpoc_rDNA_ITS12_consensus-1 Cladonia pocillum; ; consensus sequence;500
ITS_Cpor_rDNA_ITS12_consensus-1 Cladonia portentosa; ; consensus sequence;508
ITS_Cpyx_rDNA_ITS12_consensus-1 Cladonia pyxidata; ; consensus sequence;503
ITS_Craf_rDNA_ITS12_consensus-1 Cladonia rangiferina; ; consensus sequence;503
ITS_Cran_rDNA_ITS12_consensus-1 Cladonia rangiformis; ; consensus sequence;503
ITS_Csyq_rDNA_ITS12_consensus-1 Cladonia rei; ; consensus sequence;501
ITS_Csca_rDNA_ITS12_consensus-1 Cladonia scabriuscula; ; consensus sequence;507
ITS_Csqu_rDNA_ITS12_consensus-1 Cladonia squamosa; ; consensus sequence;502
ITS_Cste_rDNA_ITS12_consensus-1 Cladonia stellaris; ; consensus sequence;510
ITS_Csty_rDNA_ITS12_consensus-1 Cladonia stygia; ; consensus sequence;504
ITS_Cte1_rDNA_ITS12_consensus-1 Cladonia subtenuis; ; consensus sequence;504
ITS_Ctur_rDNA_ITS12_consensus-1 Cladonia subturgida; ; consensus sequence;501
ITS_Cula_rDNA_ITS12_consensus-1 Cladonia subulata; ; consensus sequence;505
ITS_Csym_rDNA_ITS12_consensus-1 Cladonia symphycarpia; ; consensus sequence;510
ITS_Cunc_rDNA_ITS12_consensus-1 Cladonia uncialis; ; consensus sequence;504
ITS_Ctic_rDNA_ITS12_consensus-1 Cladonia verticillata; ; consensus sequence;505
ITS_Chum_rDNA_ITS12_GR013c2202-1 Cladonia humilis; ; isolate=GR013;505
ITS_Cran_rDNA_ITS12_GR013c144-1 Cladonia rangiformis; ; isolate=GR013;502
ITS_Cran_rDNA_ITS12_GR013c144-2 Cladonia rangiformis; ; isolate=GR013;502
RLG_Cran_Horus_RND-1001 Cladonia rangiformis; ; complete element6075
RLG_Cran_Horus_RND-1003 Cladonia rangiformis; ; complete element6086
RLG_Cran_Horus_RND-1005 Cladonia rangiformis; ; complete element6093
RLG_Cran_Horus_RND-1006 Cladonia rangiformis; ; complete element6075
RLG_Cran_Horus_RND-1007 Cladonia rangiformis; ; complete element6075
RLG_Cran_Horus_RND-1009 Cladonia rangiformis; ; complete element6088
RLG_Cran_Horus_RND-1010 Cladonia rangiformis; ; complete element6085
RLG_Cran_Horus_RND-1011 Cladonia rangiformis; ; complete element6092
RLG_Cran_Horus_RND-1012 Cladonia rangiformis; ; complete element6091
RLG_Cran_Horus_RND-1013 Cladonia rangiformis; ; complete element6093
RLG_Cran_Horus_RND-1014 Cladonia rangiformis; ; complete element6101
RLG_Cran_Horus_RND-1015 Cladonia rangiformis; ; complete element6091
RLG_Cran_Horus_RND-1016 Cladonia rangiformis; ; complete element6060
RLG_Cran_Kiruk_chr02-000398 Cladonia rangiformis; ; complete element8180
RLG_Cran_Kiruk_chr01-000405 Cladonia rangiformis; ; complete element8177
RLG_Cran_Kiruk_chr02-001616 Cladonia rangiformis; ; complete element8178
RLG_Cran_Kiruk_chr05-000704 Cladonia rangiformis; ; complete element8198
RLG_Cran_Kiruk_chr05-001934 Cladonia rangiformis; ; complete element8200
RLG_Cran_Kiruk_chr08-001265 Cladonia rangiformis; ; complete element3965
RLG_Cran_Kiruk_chr10-000474 Cladonia rangiformis; ; complete element8191
RLG_Cran_Kiruk_chr14-000973 Cladonia rangiformis; ; complete element8199
RLG_Cran_Kiruk_chr18-001111 Cladonia rangiformis; ; complete element8182
RLG_Cran_Kiruk_chr21-000294 Cladonia rangiformis; ; complete element8196
RLG_Cran_Kiruk_chr23-000387 Cladonia rangiformis; ; complete element8206
RLC_Cran_Clara_chr02-000924 Cladonia rangiformis; ; complete element6013
RLC_Cran_Clara_chr02-000940 Cladonia rangiformis; ; complete element5007
RLC_Cran_Clara_chr05-001574 Cladonia rangiformis; ; complete element5013
RLC_Cran_Clara_chr05-001600 Cladonia rangiformis; ; complete element4967
RLC_Cran_Clara_chr05-001654 Cladonia rangiformis; ; complete element5007
RLC_Cran_Clara_chr08-000660 Cladonia rangiformis; ; complete element5012
RLC_Cran_Clara_chr08-000670 Cladonia rangiformis; ; complete element5016
RLC_Cran_Clara_chr10-000484 Cladonia rangiformis; ; complete element4833
RLC_Cran_Clara_chr10-000494 Cladonia rangiformis; ; complete element5009
RLC_Cran_Clara_chr12-000690 Cladonia rangiformis; ; complete element5012
RLC_Cran_Clara_chr13-001443 Cladonia rangiformis; ; complete element5013
RLC_Cran_Clara_chr13-001453 Cladonia rangiformis; ; complete element4957
RLC_Cran_Clara_chr13-001463 Cladonia rangiformis; ; complete element4938
RLC_Cran_Clara_chr13-001477 Cladonia rangiformis; ; complete element4890
RLC_Cran_Clara_chr14-000143 Cladonia rangiformis; ; complete element5012
RLC_Cran_Clara_chr14-000788 Cladonia rangiformis; ; complete element5016
RLC_Cran_Clara_chr14-000820 Cladonia rangiformis; ; complete element5015
RLC_Cran_Clara_chr14-001084 Cladonia rangiformis; ; complete element5012
RLC_Cran_Clara_chr15-000788 Cladonia rangiformis; ; complete element5009
RLC_Cran_Clara_chr15-000802 Cladonia rangiformis; ; complete element5016
RLC_Cran_Clara_chr15-001293 Cladonia rangiformis; ; complete element5009
RLC_Cran_Clara_chr15-001321 Cladonia rangiformis; ; complete element5014
RLC_Cran_Clara_chr15-001331 Cladonia rangiformis; ; complete element5016
RLC_Cran_Clara_chr15-001337 Cladonia rangiformis; ; complete element5021
RLC_Cran_Clara_chr15-001366 Cladonia rangiformis; ; complete element5013
RLC_Cran_Clara_chr18-000485 Cladonia rangiformis; ; complete element4659
RLC_Cran_Clara_chr18-000788 Cladonia rangiformis; ; complete element4692
RLC_Cran_Clara_chr21-000302 Cladonia rangiformis; ; complete element5017
RLC_Cran_Clara_chr23-000014 Cladonia rangiformis; ; complete element5012
RLC_Cran_Kolokithokeftedes_chr24-000447 Cladonia rangiformis; ; complete element5169
RLC_Cran_Kolokithokeftedes_chr01-001882 Cladonia rangiformis; ; complete element5169
RLC_Cran_Kolokithokeftedes_chr03-000000 Cladonia rangiformis; ; complete element5161
RLC_Cran_Kolokithokeftedes_chr08-000039 Cladonia rangiformis; ; complete element5172
RLC_Cran_Kolokithokeftedes_chr11-001051 Cladonia rangiformis; ; complete element5169
RLC_Cran_Kolokithokeftedes_chr16-000182 Cladonia rangiformis; ; complete element3865
RLC_Cran_Kolokithokeftedes_chr24-000437 Cladonia rangiformis; ; complete element5586
RLC_Cran_Kolokithokeftedes_chr24-000526 Cladonia rangiformis; ; complete element5132
RLC_Cran_Kolokithokeftedes_chr24-000585 Cladonia rangiformis; ; complete element3652
RLC_Cran_Kolokithokeftedes_chr26-000460 Cladonia rangiformis; ; complete element5169
RLC_Cran_Catnip_chr06-000255 Cladonia rangiformis; ; complete element5095
RLC_Cran_Catnip_chr01-001949 Cladonia rangiformis; ; complete element4139
RLC_Cran_Catnip_chr08-000039 Cladonia rangiformis; ; complete element4747
RLC_Cran_Catnip_chr09-001433 Cladonia rangiformis; ; complete element5647