TREP, the TRansposable Elements Platform
Fasta file for Secale elements in PTREP
Sequences: 73
Total size: 63215 aa
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| Sequence | Size |
|---|---|
| RLG_Scer_unnamed_AF222021-1 Secale cereale; ; polyprotein | 178 |
| DTC_Scer_Clifford_A_consensus-3 Secale cereale; ; transposase; | 1117 |
| DTC_Scer_Clifford_A_consensus-3 Secale cereale; ; ORF2; | 1023 |
| DTC_Scer_Clifford_B_consensus-3 Secale cereale; ; transposase; | 1117 |
| DTC_Scer_Clifford_B_consensus-3 Secale cereale; ; ORF2; | 961 |
| DTC_Scer_Clifford_C_consensus-3 Secale cereale; ; transposase; | 1117 |
| DTC_Scer_Clifford_C_consensus-3 Secale cereale; ; ORF2; | 966 |
| DTC_Scer_Clifford_D_consensus-3 Secale cereale; ; transposase; | 1117 |
| DTC_Scer_Clifford_D_consensus-3 Secale cereale; ; ORF2; | 930 |
| DTC_Scer_Conan_A1_consensus-3 Secale cereale; ; ORF2; | 1133 |
| DTC_Scer_Conan_A2_consensus-3 Secale cereale; ; ORF3; | 305 |
| DTC_Scer_Conan_A2A_consensus-3 Secale cereale; ; ORF3; | 337 |
| DTC_Scer_Conan_A3_consensus-3 Secale cereale; ; transposase; | 1168 |
| DTC_Scer_Conan_A3_consensus-3 Secale cereale; ; ORF3; | 346 |
| RLC_Scer_Angela_AA1_consensus-3 Secale cereale; ; polyprotein; | 1328 |
| RLC_Scer_Angela_AA2_consensus-3 Secale cereale; ; polyprotein; | 1329 |
| RLC_Scer_Angela_AA3_consensus-3 Secale cereale; ; polyprotein; | 1328 |
| RLC_Scer_Angela_AA4_consensus-3 Secale cereale; ; polyprotein; | 1329 |
| RLC_Scer_Angela_BA1_consensus-3 Secale cereale; ; polyprotein; | 1327 |
| RLC_Scer_Angela_BA2_consensus-3 Secale cereale; ; polyprotein; | 1343 |
| RLC_Scer_Angela_BA3_consensus-3 Secale cereale; ; polyprotein; | 1343 |
| RLC_Scer_Angela_DA1_consensus-3 Secale cereale; ; polyprotein; | 1330 |
| RLC_Scer_Angela_DA2_consensus-3 Secale cereale; ; polyprotein; | 1330 |
| RLC_Scer_Angela_DA3_consensus-3 Secale cereale; ; polyprotein; | 1329 |
| RLC_Scer_Angela_DA4_consensus-3 Secale cereale; ; polyprotein; | 1329 |
| RLG_Scer_WHAM_AA1_consensus-3 Secale cereale; ; polyprotein; | 906 |
| RLG_Scer_WHAM_AA1_consensus-3 Secale cereale; ; ORF2; | 361 |
| RLG_Scer_WHAM_AA2_consensus-3 Secale cereale; ; polyprotein; | 909 |
| RLG_Scer_WHAM_AA2_consensus-3 Secale cereale; ; ORF2; | 361 |
| RLG_Scer_WHAM_AA3_consensus-3 Secale cereale; ; polyprotein; | 909 |
| RLG_Scer_WHAM_AA3_consensus-3 Secale cereale; ; ORF2; | 361 |
| RLG_Scer_WHAM_AA4_consensus-3 Secale cereale; ; polyprotein; | 906 |
| RLG_Scer_WHAM_AA4_consensus-3 Secale cereale; ; ORF2; | 342 |
| RLG_Scer_WHAM_AA5_consensus-3 Secale cereale; ; polyprotein; | 909 |
| RLG_Scer_WHAM_AA5_consensus-3 Secale cereale; ; ORF2; | 342 |
| RLG_Scer_WHAM_AA6_consensus-3 Secale cereale; ; polyprotein; | 909 |
| RLG_Scer_WHAM_AA6_consensus-3 Secale cereale; ; ORF2; | 342 |
| RLG_Scer_WHAM_BA1_consensus-3 Secale cereale; ; polyprotein; | 927 |
| RLG_Scer_WHAM_BA1_consensus-3 Secale cereale; ; ORF2; | 345 |
| RLG_Scer_WHAM_BA2_consensus-3 Secale cereale; ; polyprotein; | 928 |
| RLG_Scer_WHAM_BA2_consensus-3 Secale cereale; ; ORF2; | 339 |
| RLG_Scer_WHAM_BA3_consensus-3 Secale cereale; ; polyprotein; | 671 |
| RLG_Scer_WHAM_BA3_consensus-3 Secale cereale; ; ORF2; | 338 |
| RLG_Scer_WHAM_BA6_consensus-3 Secale cereale; ; polyprotein; | 927 |
| RLG_Scer_WHAM_BA6_consensus-3 Secale cereale; ; ORF2; | 336 |
| RLG_Scer_WHAM_CA1_consensus-3 Secale cereale; ; polyprotein; | 922 |
| RLG_Scer_WHAM_CA1_consensus-3 Secale cereale; ; ORF2; | 264 |
| RLG_Scer_WHAM_CA2_consensus-3 Secale cereale; ; polyprotein; | 875 |
| RLG_Scer_WHAM_CA2_consensus-3 Secale cereale; ; ORF2; | 361 |
| RLG_Scer_Cereba_A_consensus-3 Secale cereale; ; polyprotein; | 1674 |
| RLG_Scer_Cereba_B_consensus-3 Secale cereale; ; polyprotein; | 1703 |
| RLG_Scer_Cereba_C_consensus-3 Secale cereale; ; polyprotein; | 1620 |
| RLG_Scer_Sabrina_A1_consensus-3 Secale cereale; ; GAG; | 689 |
| RLG_Scer_Sabrina_A3_consensus-3 Secale cereale; ; ORF3; | 278 |
| RLG_Scer_Sabrina_A4_consensus-3 Secale cereale; ; ORF4; | 272 |
| RLG_Scer_Sabrina_C1_consensus-3 Secale cereale; ; GAG; | 694 |
| RLG_Scer_Sabrina_C2_consensus-3 Secale cereale; ; GAG; | 694 |
| RLG_Scer_Sabrina_C5_consensus-3 Secale cereale; ; ORF4; | 270 |
| RLG_Scer_Sabrina_D1_consensus-3 Secale cereale; ; ORF5; | 311 |
| RLG_Scer_Sabrina_D2_consensus-3 Secale cereale; ; ORF5; | 311 |
| RLG_Scer_Sabrina_E1_consensus-3 Secale cereale; ; ORF5; | 274 |
| RLG_Scer_Sabrina_E2_consensus-3 Secale cereale; ; ORF5; | 272 |
| DTM_Scer_Remy_consensus-1 Secale cereale; ; transposase | 876 |
| DTM_Scer_Remy_consensus-1 Secale cereale; ; ORF2 | 755 |
| DTM_Scer_Ryemu_chr1R-9 Secale cereale; ; transposase | 858 |
| RLG_Scer_Fatima_A_consensus-3 Secale cereale; ; polyprotein; | 1734 |
| RLG_Scer_Cereba_Sc1_consensus-4 Secale cereale; ; polyprotein; | 1660 |
| RLG_Scer_Cereba_Sc2_consensus-4 Secale cereale; ; polyprotein; | 1660 |
| RLG_Scer_Cereba_Sc3_consensus-4 Secale cereale; ; polyprotein; | 1659 |
| RLG_Scer_Cereba_Sc4_consensus-4 Secale cereale; ; polyprotein; | 1657 |
| RLG_Scer_Quinta_A2_consensus-1 Secale cereale; ; GAG_DUF; | 668 |
| RLG_Scer_Quinta_B1_consensus-1 Secale cereale; ; GAG_DUF; | 688 |
| RLG_Scer_Quinta_B2_consensus-1 Secale cereale; ; GAG_DUF; | 688 |