TREP, the TRansposable Elements Platform
Fasta file for RLC elements in PTREP
Sequences: 148
Total size: 172557 aa
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| Sequence | Size |
|---|---|
| RLC_Tmon_Ale_109N23-1 Triticum monococcum; Retrotransposon, LTR, Copia; polyprotein | 1562 |
| RLC_Hvul_Ikya_AY853252-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1386 |
| RLC_Hvul_Lena_AY853252-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 285 |
| RLC_Taes_Oref_1020F19-1 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein | 1498 |
| RLC_Hvul_Zenia_AY853252-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1122 |
| RLC_Hvul_HORPIA2_AF427791-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1517 |
| RLC_Hvul_Ikya_EF067844-1 Hordeum vulgare; Retrotransposon, LTR, Copia; hypotehtical protein | 1173 |
| RLC_Hvul_Ikya_AY853252-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1332 |
| RLC_Hvul_Ivana_EF067844-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1368 |
| RLC_Hvul_HORPIA2_AF427791-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1434 |
| RLC_Hvul_Usier_AF474982-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1130 |
| RLC_Hvul_Bianca_AF521177-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1054 |
| RLC_Hvul_HORPIA2_AF521177-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1435 |
| RLC_Hvul_Ikeros_AY013246-1 Hordeum vulgare; Retrotransposon, LTR, Copia; hypotehtical protein | 150 |
| RLC_Hvul_Inav_AY013246-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1610 |
| RLC_Tmon_Barbara_AF326781-1 Triticum monococcum; Retrotransposon, LTR, Copia; polyprotein | 708 |
| RLC_Tmon_Barbara_AF326781-1 Triticum monococcum; Retrotransposon, LTR, Copia; polyprotein | 1354 |
| RLC_Tmon_Angela_609E6-3 Triticum monococcum; Retrotransposon, LTR, Copia; polyprotein | 1328 |
| RLC_Tmon_Ale_AF459088-1 Triticum monococcum; Retrotransposon, LTR, Copia; polyprotein | 1516 |
| RLC_Tmon_TAR1_AF459088-2 Triticum monococcum; Retrotransposon, LTR, Copia; polyprotein | 1219 |
| RLC_Tdur_Angela_AY146587-1 Triticum durum; Retrotransposon, LTR, Copia; polyprotein | 1329 |
| RLC_Hvul_Elena_AY661558-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 442 |
| RLC_Hvul_HORPIA_A_AY661558-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein ; | 1362 |
| RLC_Hvul_Inga_AY661558-2 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1996 |
| RLC_Hvul_Rada_AY661558-1 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein | 1163 |
| RLC_Tunk_BARE1_B_consensus-1 Triticum unknown; Retrotransposon, LTR, Copia; polyprotein ; | 1327 |
| RLC_Tunk_BARE1_C_consensus-1 Triticum unknown; Retrotransposon, LTR, Copia; polyprotein ; | 1328 |
| RLC_Tunk_Eugene_consensus-1 Triticum unknown; Retrotransposon, LTR, Copia; polyprotein | 798 |
| RLC_Tunk_Maximus_consensus-1 Triticum unknown; Retrotransposon, LTR, Copia; polyprotein | 1979 |
| RLC_Tunk_Maximus_consensus-1 Triticum unknown; Retrotransposon, LTR, Copia; ORF2 protein | 470 |
| RLC_Tunk_Maximus_consensus-1 Triticum unknown; Retrotransposon, LTR, Copia; ORF3 protein | 454 |
| RLC_Taes_Olivia_42j2-1 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein | 1516 |
| RLC_Tunk_WIS_B_consensus-1 Triticum unknown; Retrotransposon, LTR, Copia; transposase ; | 1326 |
| RLC_Bgt_Basima_consensus-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; consensus sequence | 1004 |
| RLC_Bgh_Gaia_RND-1 Blumeria graminis_hordei; Retrotransposon, LTR, Copia; polyprotein | 1256 |
| RLC_Bgh_Gaia_RND-1 Blumeria graminis_hordei; Retrotransposon, LTR, Copia; polyprotein | 190 |
| RLC_Bgh_Hera_RND-1 Blumeria graminis_hordei; Retrotransposon, LTR, Copia; polyprotein | 794 |
| RLC_Bgh_Hera_RND-1 Blumeria graminis_hordei; Retrotransposon, LTR, Copia; polyprotein | 689 |
| RLC_Bgh_Nike_RND-1 Blumeria graminis_hordei; Retrotransposon, LTR, Copia; polyprotein | 407 |
| RLC_Bgt_Aegina_RND-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1456 |
| RLC_Bgt_Artemis_RND-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1655 |
| RLC_Bgt_Athena_RND-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1115 |
| RLC_Bgt_Athena_RND-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 488 |
| RLC_Bgt_Briseis_RND-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1396 |
| RLC_Bgt_Daphne_RND-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 579 |
| RLC_Bgt_Ino_RND-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1562 |
| RLC_Dmel_DmelA_RND-1 Drosophila melanogaster; Retrotransposon, LTR, Copia; polyprotein | 1410 |
| RLC_Dmel_DmelB_RND-1 Drosophila melanogaster; Retrotransposon, LTR, Copia; polyprotein | 1284 |
| RLC_Dmel_DmelD_RND-1 Drosophila melanogaster; Retrotransposon, LTR, Copia; polyprotein | 1320 |
| RLC_Dmel_DmelE_RND-1 Drosophila melanogaster; Retrotransposon, LTR, Copia; polyprotein | 1228 |
| RLC_Ehux_EhuxA_RND-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 955 |
| RLC_Ehux_EhuxB_RND-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 1025 |
| RLC_Ehux_EhuxC_RND-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 1056 |
| RLC_Ehux_EhuxE_consensus-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 1755 |
| RLC_Ehux_EhuxE_RND-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 1016 |
| RLC_Ehux_EhuxF_RND-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 582 |
| RLC_Ehux_EhuxF_RND-2 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 2623 |
| RLC_Ehux_EhuxG_RND-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 1515 |
| RLC_Ehux_EhuxK_RND-2 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 1858 |
| RLC_Ehux_EhuxL_RND-1 Emiliania huxlei; Retrotransposon, LTR, Copia; polyprotein | 612 |
| RLC_Gthe_GtheA_RND-1 Guillardia theta; Retrotransposon, LTR, Copia; polyprotein | 1347 |
| RLC_Gthe_GtheA_RND-1 Guillardia theta; Retrotransposon, LTR, Copia; gag protein | 390 |
| RLC_Gthe_GtheB_RND-1 Guillardia theta; Retrotransposon, LTR, Copia; polyprotein | 1620 |
| RLC_Gthe_GtheB_RND-1 Guillardia theta; Retrotransposon, LTR, Copia; gag protein | 362 |
| RLC_Gthe_GtheC_RND-1 Guillardia theta; Retrotransposon, LTR, Copia; polyprotein | 2064 |
| RLC_Gthe_GtheD_RND-2 Guillardia theta; Retrotransposon, LTR, Copia; polyprotein | 2009 |
| RLC_Gthe_GtheE_RND-1 Guillardia theta; Retrotransposon, LTR, Copia; polyprotein | 2036 |
| RLC_Gthe_GtheF_RND-1 Guillardia theta; Retrotransposon, LTR, Copia; polyprotein | 2144 |
| RLC_Mbre_MbreA_consensus-1 Monosiga brevicollis; Retrotransposon, LTR, Copia; polyprotein | 1497 |
| RLC_Mbre_MbreB_RND-1 Monosiga brevicollis; Retrotransposon, LTR, Copia; polyprotein | 596 |
| RLC_Mbre_MbreC_RND-1 Monosiga brevicollis; Retrotransposon, LTR, Copia; polyprotein | 1168 |
| RLC_Mgri_MgriA_consensus-1 Magnaporthe grisea; Retrotransposon, LTR, Copia; polyprotein | 1758 |
| RLC_Ogla_Owis_RND-1 Oryza glaberrima; Retrotransposon, LTR, Copia; polyprotein | 1320 |
| RLC_Pinf_PinfB_RND-3 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 787 |
| RLC_Pinf_PinfC_RND-1 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 1651 |
| RLC_Pinf_PinfE_RND-1 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 726 |
| RLC_Pinf_PinfF_RND-1 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 1322 |
| RLC_Pinf_PinfG_RND-1 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 1322 |
| RLC_Pinf_PinfH_RND-1 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 1054 |
| RLC_Pinf_PinfI_RND-1 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 1734 |
| RLC_Pinf_PinfJ_RND-1 Phytophthora infestans; Retrotransposon, LTR, Copia; polyprotein | 1115 |
| RLC_Unkn_PpolA_RND-1 Unknown unknown; Retrotransposon, LTR, Copia; polyprotein | 1321 |
| RLC_Unkn_RsalA_RND-1 Unknown unknown; Retrotransposon, LTR, Copia; polyprotein | 1466 |
| RLC_Scey_Ty1_consensus-1 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; polyprotein | 1756 |
| RLC_Scey_Ty1_RND-1 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; polyprotein | 1304 |
| RLC_Scey_Ty4_consensus-1 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; polyprotein | 1465 |
| RLC_Osat_Rare1_Os7-5 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1043 |
| RLC_Osat_Rare1_Os7-5 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 377 |
| RLC_Osat_Rare2_RND-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1068 |
| RLC_Osat_Rare2_RND-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 211 |
| RLC_Osat_Rare3_RND-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1439 |
| RLC_Osat_Rare1_Os7-5 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1043 |
| RLC_Osat_Rare1_Os7-5 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 377 |
| RLC_Osat_Rare2_RND-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1030 |
| RLC_Osat_Rare2_RND-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 211 |
| RLC_Osat_Rare3_RND-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1439 |
| RLC_Osat_Simone_RND-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1439 |
| RLC_Bgt_CK_consensus-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1204 |
| RLC_Bgt_CK_consensus-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; GAG | 345 |
| RLC_Bgt_Daphne_RND-2 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 773 |
| RLC_Bgt_Daphne_RND-2 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; GAG | 541 |
| RLC_Bgt_WC_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 939 |
| RLC_Bgt_WC_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; ORF1 | 384 |
| RLC_Bgt_WD_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1526 |
| RLC_Bgt_WA_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 911 |
| RLC_Bgt_WA_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; GAG | 182 |
| RLC_Bgt_WB_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1329 |
| RLC_Bgt_WE_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1399 |
| RLC_Bgt_WF_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 915 |
| RLC_Bgt_WF_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; GAG | 263 |
| RLC_Bgt_WF_Bgtchr01-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; ORF2 | 205 |
| RLC_Bgt_Aristophanes_consensus-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1713 |
| RLC_Taes_Angela_B_consensus-2 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; | 1329 |
| RLC_Taes_Angela_A_consensus-2 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; | 1203 |
| RLC_Bgt_Gamera_consensus-1 Blumeria graminis_tritici; Retrotransposon, LTR, Copia; polyprotein | 1420 |
| RLC_Scey_Ty1_consensus-2 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; polyprotein | 1329 |
| RLC_Scey_Ty1_consensus-2 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; GAG | 441 |
| RLC_Scey_Ty2_consensus-2 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; polyprotein | 1347 |
| RLC_Scey_Ty2_consensus-2 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; GAG | 439 |
| RLC_Scey_Ty4_consensus-2 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; polyprotein | 1466 |
| RLC_Scey_Ty4_consensus-2 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; GAG | 414 |
| RLC_Scey_Ty5_ChrIII-2 Saccharomyces cerevisiae; Retrotransposon, LTR, Copia; GAG | 248 |
| RLC_Bdis_BdisC008_consensus-1 Brachypodium distachyon; Retrotransposon, LTR, Copia; polyprotein | 1487 |
| RLC_Bdis_BdisC006_consensus-1 Brachypodium distachyon; Retrotransposon, LTR, Copia; polyprotein | 1411 |
| RLC_Taes_Angela_AA1_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1327 |
| RLC_Taes_Angela_AA2_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1327 |
| RLC_Taes_Angela_AA3_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1327 |
| RLC_Taes_Angela_AA4_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1333 |
| RLC_Taes_Angela_BA1_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1329 |
| RLC_Taes_Angela_BA2_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1329 |
| RLC_Taes_Angela_BA3_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1329 |
| RLC_Taes_Angela_BA4_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1329 |
| RLC_Taes_Angela_BA5_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1329 |
| RLC_Taes_Angela_BA6_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1329 |
| RLC_Taes_Angela_BA7_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1329 |
| RLC_Taes_Angela_CA1_consensus-3 Triticum aestivum; Retrotransposon, LTR, Copia; polyprotein; variety=ArinaLrForv3; | 1327 |
| RLC_Scer_Angela_AA1_consensus-3 Secale cereale; Retrotransposon, LTR, Copia; polyprotein; variety=Lo7v1p1; | 1327 |
| RLC_Scer_Angela_AA2_consensus-3 Secale cereale; Retrotransposon, LTR, Copia; polyprotein; variety=Lo7v1p1; | 1327 |
| RLC_Scer_Angela_AA3_consensus-3 Secale cereale; Retrotransposon, LTR, Copia; polyprotein; variety=Lo7v1p1; | 1327 |
| RLC_Scer_Angela_AA4_consensus-3 Secale cereale; Retrotransposon, LTR, Copia; polyprotein; variety=Lo7v1p1; | 1327 |
| RLC_Bdis_BdisC022_consensus-2 Brachypodium distachyon; Retrotransposon, LTR, Copia; polyprotein | 1324 |
| RLC_Hvul_BARE1_BA1_consensus-3 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein; variety=Morexv4; | 1327 |
| RLC_Hvul_BARE1_BA2_consensus-3 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein; variety=Morexv4; | 1327 |
| RLC_Hvul_BARE1_BA3_consensus-3 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein; variety=Morexv4; | 1327 |
| RLC_Hvul_BARE1_CA1_consensus-3 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein; variety=Morexv4; | 1328 |
| RLC_Hvul_BARE1_CA2_consensus-3 Hordeum vulgare; Retrotransposon, LTR, Copia; polyprotein; variety=Morexv4; | 1328 |
| RLC_Osat_TAR10_consensus-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1340 |
| RLC_Osat_TAR2_consensus-1 Oryza sativa; Retrotransposon, LTR, Copia; polyprotein | 1329 |